Issues

• bgzf_read error thetaStat do_stat

  ANGSD/angsd#675 · Filter by author jmhallas opened on Oct 1, 2026

• duplication of rows in my beagle file

  ANGSD/angsd#663 · Filter by author Aksinhaa opened on Aug 21, 2026

• Tajima's D sliding window estimates showing unexpected banding around 0 and 1.75 in Manhattan plot

  ANGSD/angsd#662 · Filter by author abbiehay opened on Jul 31, 2026

• setMinDepth cannot be less than -1

  ANGSD/angsd#661 · Filter by author LawrenceGordon opened on Mar 16, 2026

• Segmentation fault when using -rmTrans 1

  ANGSD/angsd#660 · Filter by author PattSS opened on Mar 10, 2026

• No sites retained when using -sites

  ANGSD/angsd#659 · Filter by author partridc opened on Jan 22, 2026
  1

• Base quality score in new NovaSeqX software

  ANGSD/angsd#658 · Filter by author meixilin opened on Jan 19, 2026

• Single chromosome SFS prior use for other chromosomes

  ANGSD/angsd#657 · Filter by author nirwan1265 opened on Oct 8, 2025

• Minor points on installation

  ANGSD/angsd#656 · Filter by author jinghuazhao opened on Sep 2, 2025

• When running ANGSD/realSFS, how can I exclude data from a specific chromosome, such as the X chromosome?

  ANGSD/angsd#655 · Filter by author kuangzhuoran opened on Jul 14, 2025

• How long can the ANGSD relatedness analysis take?

  ANGSD/angsd#654 · Filter by author juanfmasello opened on Jun 27, 2025

• doIBS -maxFreq argument removes all sites

  ANGSD/angsd#652 · Filter by author alexpiper opened on Apr 12, 2025

• vcf input with population info

  ANGSD/angsd#651 · Filter by author Ida921 opened on Mar 26, 2025

• Issue in SNP calling

  ANGSD/angsd#650 · Filter by author faizee-ali opened on Mar 19, 2025
  1

• SNPs calling

  ANGSD/angsd#649 · Filter by author zhengluo-zz opened on Mar 19, 2025
  1

• doMaf (?) relabelling all chromosomes as Chr1

  ANGSD/angsd#648 · Filter by author mhuzzell opened on Mar 10, 2025
  1

• Locating DSTAT.R

  ANGSD/angsd#647 · Filter by author szitenberg opened on Feb 4, 2025

• Exit code should be non-zero when failing to read an input file

  ANGSD/angsd#646 · Filter by author Gullumluvl opened on Jan 22, 2025

• Calling pseudohaploid genotypes

  ANGSD/angsd#644 · Filter by author jkimsis opened on Jan 16, 2025

• NGSadmix plots have inconsistencies among reps.

  ANGSD/angsd#642 · Filter by author carolazari opened on Dec 18, 2024
  1

• Variability in heterozygotes between folded and unfolded SFS

  ANGSD/angsd#641 · Filter by author NicoleAdams-sci opened on Dec 4, 2024

• glfReader.cpp killed

  ANGSD/angsd#640 · Filter by author masashi-S-suzie opened on Nov 26, 2024

• installation - Error 127

  ANGSD/angsd#639 · Filter by author juanfmasello opened on Nov 14, 2024

• ANGSD website down?

  ANGSD/angsd#638 · Filter by author nickylustenhouwer opened on Nov 11, 2024
  1

• realSFS saf2theta error: -> Pxroblem with size of dimension of prior 9 vs 44323

  ANGSD/angsd#637 · Filter by author GuidoGallo opened on Oct 31, 2024