Issues

• Inconsistent RUC estimates between samples with similar CIGAR-derived insertion profiles

  BirolLab/straglr#85 · Filter by author antoniotescari opened on Jun 16, 2026

• Incorrect merging of alleles.

  BirolLab/straglr#83 · Filter by author ljohansson opened on Mar 11, 2026
  2

• MAPQ0

  BirolLab/straglr#82 · Filter by author ljohansson opened on Mar 11, 2026
  2

• ERROR while using --include_partials arg

  BirolLab/straglr#81 · Filter by author JbaptisteLam opened on Feb 27, 2026

• Meaning of single GT value

  BirolLab/straglr#80 · Filter by author hdashnow opened on Jan 7, 2026
  5

• Syntax warnings

  BirolLab/straglr#79 · Filter by author awgymer opened on Nov 17, 2025
  1

• min_str_len not working

  BirolLab/straglr#78 · Filter by author tzhu-bio opened on Nov 6, 2025
  1

• merge results from straglr

  BirolLab/straglr#77 · Filter by author tzhu-bio opened on Nov 3, 2025
  1

• [error]: sequence chr22 is not present

  BirolLab/straglr#75 · Filter by author tamuanand opened on Sep 18, 2025
  1

• STRchive disease loci catalog

  BirolLab/straglr#74 · Filter by author hdashnow opened on Sep 10, 2025
  1

• VCF output is not compatible with current version of PySAM

  BirolLab/straglr#73 · Filter by author davidlougheed opened on Aug 19, 2025
  3

• Support for alternate chromosome names?

  BirolLab/straglr#70 · Filter by author skpeterson opened on Jun 5, 2025
  3

• Clarification on VCF Output

  BirolLab/straglr#69 · Filter by author HLHsieh opened on May 19, 2025
  8

• Determine the first and last reference base included in the STR call

  BirolLab/straglr#68 · Filter by author ljohansson opened on Apr 15, 2025
  4

• Expectation of no. of allele in a loci

  BirolLab/straglr#67 · Filter by author NabilAsyraf98 opened on Apr 9, 2025
  4

• bed file

  BirolLab/straglr#66 · Filter by author bioinfomatio opened on Apr 8, 2025
  1

• --max_str_len and --max_cov are not working

  BirolLab/straglr#65 · Filter by author xbwdk opened on Apr 8, 2025
  1

• inconsistent repeat unit for targeted locus genotyping?

  BirolLab/straglr#63 · Filter by author h-orias opened on Mar 19, 2025
  14

• can't limit to specific chromosome?

  BirolLab/straglr#62 · Filter by author h-orias opened on Jan 29, 2025
  5

• Missed RepeatExpansion calls

  BirolLab/straglr#61 · Filter by author leonschuetz opened on Jan 29, 2025
  17

• Can straglr benchmark HG002?

  BirolLab/straglr#57 · Filter by author HongyuanChu opened on Dec 26, 2024
  3

• Expanded allele not detected

  BirolLab/straglr#56 · Filter by author stfacc opened on Nov 25, 2024
  4

• Problem with VCF files

  BirolLab/straglr#55 · Filter by author stfacc opened on Nov 20, 2024
  2

• TypeError: 'NoneType' object is not subscriptable

  BirolLab/straglr#49 · Filter by author jawad9-11 opened on Sep 11, 2024
  1

• Error: malformed BED entry at line xxx. Start Coordinate detected that is < 0.

  BirolLab/straglr#48 · Filter by author minw2828 opened on Sep 11, 2024
  4