Issues

• write10xCounts() writes data/indices as a single HDF5 chunk, causing slowdowns/failures in streaming readers

  MarioniLab/DropletUtils#131 · Filter by author stephenwilliams22 opened on Jul 28, 2026
  3

• emptyDrops high false calls after switching from STAR to STARsolo for Illumina sciRNA-seq data

  MarioniLab/DropletUtils#130 · Filter by author athuyvo opened on Jul 6, 2026
  1

• Input for ambient argument in hashedDrops function for 10X single cell data

  MarioniLab/DropletUtils#120 · Filter by author tim-meese opened on Mar 12, 2025
  2

• emptyDropsCellRanger index out of bounds style error

  MarioniLab/DropletUtils#109 · Filter by author jamesnemesh opened on Jun 3, 2024
  2

• Add n.expected.cells estimation to emptyDropsCellRanger

  MarioniLab/DropletUtils#88 · Filter by author jashapiro opened on Jul 13, 2022
  4

• Usage between swappedDrops and chimericDrops ...

  MarioniLab/DropletUtils#86 · Filter by author drkoryjohns opened on Apr 15, 2022
  3

• using read10xMolInfo (v1.14.0 for h5 files from v1.6.1

  MarioniLab/DropletUtils#81 · Filter by author chensujun opened on Nov 9, 2021
  5

• Failing tests

  MarioniLab/DropletUtils#76 · Filter by author nileshpatra opened on Sep 27, 2021
  1

• Cannot run ambientContribMaximum for y with multiple columns

  MarioniLab/DropletUtils#74 · Filter by author mgrantpeters opened on Sep 13, 2021
  1

• How to run barcodeSwapping and ChimericReads with no h5 info?

  MarioniLab/DropletUtils#70 · Filter by author mortunco opened on Sep 1, 2021
  1

• emptyDrops BioC 3.11 vs 3.12: different results with the OSCA pbmc 4k dataset

  MarioniLab/DropletUtils#67 · Filter by author lcolladotor opened on Aug 11, 2021
  16

• current version fails to install (beachmat::whichNonZero export fail)

  MarioniLab/DropletUtils#62 · Filter by author lotard opened on May 20, 2021
  2

• swappedDrops on STARSolo output

  MarioniLab/DropletUtils#59 · Filter by author mbatiuk opened on Feb 16, 2021
  5

• Unable to install new version of DropletUtils

  MarioniLab/DropletUtils#52 · Filter by author liron27 opened on Sep 29, 2020
  15

• emptyDrops not producing the same results as cellranger 3.+

  MarioniLab/DropletUtils#42 · Filter by author anoronh4 opened on Apr 25, 2020
  3

• read10xCounts(..., type = "HDF5") doesn't produce TENxMatrix?

  MarioniLab/DropletUtils#15 · Filter by author PeteHaitch opened on Jun 15, 2019
  13