Issues

• modelGeneVar() extremely slow with HDF5-backed SingleCellExperiment

  MarioniLab/scran#124 · Filter by author keyingkuang opened on Apr 30, 2025
  1

• pseudoBulkDGE interaction term

  MarioniLab/scran#122 · Filter by author ynpan910 opened on Aug 10, 2024
  2

• Feature Request: pseudoBulkDGE for Non-Integer Batch-corrected Data

  MarioniLab/scran#120 · Filter by author DarioS opened on Jul 1, 2024
  2

• pseudoBulkDGE - logFC means upregulated in which condition?

  MarioniLab/scran#119 · Filter by author jcasadogp opened on May 6, 2024
  1

• Error with cyclone

  MarioniLab/scran#117 · Filter by author SarahE97 opened on Mar 25, 2024
  1

• rank.logFC.detected Produces Dubious Rankings

  MarioniLab/scran#116 · Filter by author DarioS opened on Jan 24, 2024
  4

• Marker detection in multimodal data

  MarioniLab/scran#112 · Filter by author PeteHaitch opened on Aug 10, 2023
  1

• Error in FUN(x, table, nomatch = nomatch, incomparables = incomparables) : 'match' requires vector arguments

  MarioniLab/scran#108 · Filter by author galaxyeee opened on Feb 3, 2023
  3

• Error normalizing Anndata

  MarioniLab/scran#103 · Filter by author Mari123i opened on Aug 9, 2022

• Depreciated scran functions and commands. Any updated tutorial?

  MarioniLab/scran#102 · Filter by author levinhein opened on Jul 21, 2022

• scran normalize

  MarioniLab/scran#101 · Filter by author jayypaul opened on Jun 14, 2022
  1

• Different list for findmarker function

  MarioniLab/scran#100 · Filter by author angkoomin opened on May 12, 2022
  1

• Cyclone not finishing when using BPPARAM=MulticoreParam(workers = n))

  MarioniLab/scran#98 · Filter by author Hrovatin opened on Feb 19, 2022

• Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘assay’ for signature ‘"dgRMatrix", "character"’

  MarioniLab/scran#96 · Filter by author houruiyan opened on Dec 10, 2021
  1

• Installation of package ‘scran’ had non-zero exit status

  MarioniLab/scran#87 · Filter by author awurmser opened on Mar 10, 2021
  2

• Can I use BuildSNNGraph on scWGBS data?

  MarioniLab/scran#82 · Filter by author xiaonian92 opened on Dec 29, 2020
  2

• psuedoBulkDGE

  MarioniLab/scran#80 · Filter by author elachtarajax opened on Dec 23, 2020
  5

• Implement bootstrapCluster for clusters generated in Seurat

  MarioniLab/scran#75 · Filter by author lucygarner opened on Oct 26, 2020
  6

• computeSumFactors converts some sparse matrices to dense

  MarioniLab/scran#70 · Filter by author scottgigante opened on Sep 11, 2020
  5