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cff-version: 1.2.0
message: "If you use Models Genesis, please cite the Medical Image Analysis paper below."
title: "Models Genesis: self-supervised pre-trained 3D models for medical image analysis"
abstract: "Models Genesis is a self-supervised learning framework for 3D medical imaging, and one of the first foundation models in the field. It pre-trains on unlabeled CT and MRI volumes using image restoration proxy tasks (non-linear intensity transformation, local pixel shuffling, out-painting and in-painting), then transfers to downstream segmentation and classification. Keras and PyTorch weights are provided."
type: software
repository-code: "https://github.com/MrGiovanni/ModelsGenesis"
url: "https://github.com/MrGiovanni/ModelsGenesis"
license-url: "https://github.com/MrGiovanni/ModelsGenesis/blob/master/LICENSE"
keywords:
- "self-supervised-learning"
- "representation-learning"
- "transfer-learning"
- "pretraining"
- "pretrained-models"
- "foundation-models"
- "medical-imaging"
- "medical-image-analysis"
- "medical-image-segmentation"
- "3d-segmentation"
- "ct"
- "mri"
- "computed-tomography"
- "radiology"
authors:
- family-names: "Zhou"
given-names: "Zongwei"
orcid: "https://orcid.org/0000-0002-3154-9851"
- family-names: "Sodha"
given-names: "Vatsal"
- family-names: "Siddiquee"
given-names: "Md Mahfuzur Rahman"
- family-names: "Feng"
given-names: "Ruibin"
- family-names: "Tajbakhsh"
given-names: "Nima"
- family-names: "Gotway"
given-names: "Michael B."
- family-names: "Liang"
given-names: "Jianming"
preferred-citation:
type: article
title: "Models Genesis"
authors:
- family-names: "Zhou"
given-names: "Zongwei"
orcid: "https://orcid.org/0000-0002-3154-9851"
- family-names: "Sodha"
given-names: "Vatsal"
- family-names: "Pang"
given-names: "Jiaxuan"
- family-names: "Gotway"
given-names: "Michael B."
- family-names: "Liang"
given-names: "Jianming"
journal: "Medical Image Analysis"
volume: 67
year: 2021
doi: "10.1016/j.media.2020.101840"
references:
- type: conference-paper
title: "Models Genesis: Generic Autodidactic Models for 3D Medical Image Analysis"
authors:
- family-names: "Zhou"
given-names: "Zongwei"
orcid: "https://orcid.org/0000-0002-3154-9851"
- family-names: "Sodha"
given-names: "Vatsal"
- family-names: "Siddiquee"
given-names: "Md Mahfuzur Rahman"
- family-names: "Feng"
given-names: "Ruibin"
- family-names: "Tajbakhsh"
given-names: "Nima"
- family-names: "Gotway"
given-names: "Michael B."
- family-names: "Liang"
given-names: "Jianming"
collection-title: "Medical Image Computing and Computer Assisted Intervention (MICCAI 2019)"
publisher:
name: "Springer"
start: 384
end: 393
year: 2019
doi: "10.1007/978-3-030-32251-9_42"