diff --git a/active.md b/active.md index fb25a165..6d4cf305 100644 --- a/active.md +++ b/active.md @@ -13,3 +13,36 @@ - registered: 2026-08-19 by the wake_up session — the issuing session (claude/autofit-priors-messages-audit-ylvenv) filed the prompt + issue but not this entry, tripping Lifecycle Drift on main. - repos-none-claimed: this entry claims NO repos — one line deliberately, not 2-space bullets. + +## organ-repo-spelling-splits +- issue: https://github.com/PyAutoLabs/PyAutoBrain/issues/287 +- issued: 2026-08-26 +- prompt: active/organ_repo_spellings_split_across_keys.md +- status: ready-to-ship — implemented and pushed on both branches; no PR opened + yet (PyAutoMind e160d40b, PyAutoBrain 6329db8). 515 Brain tests pass, + repos_sync --check all 13 legs OK, Heart NOT EVALUATED (web-github). +- worktree: n/a — web-github session; the session's own PyAutoBrain + PyAutoMind + clones are the checkout, on the designated branch below (no + ~/Code/PyAutoLabs-wt/ worktree exists in this environment). +- repos: + - PyAutoBrain: claude/organ-repo-spelling-splits-hbbms0 + - PyAutoMind: claude/organ-repo-spelling-splits-hbbms0 +- summary: | + Infrastructure task (organism repos only). Fourth instance of the + hand-maintained-aliases vs derived-target-set defect class (#267, #269); + this one closes the class. Keying decision taken up front per the prompt: + organs key PREFIXED (`pyautobrain`), extending #271's rule — canonical key + is the bare package name where the repo ships one, the repo name where it + does not. Fix derives the bare/prefixed/package alias join from the body + map (new `package:` identity key in repos.yaml) and adds three coverage + guards to test_policy_seams.py. Sweep also covers PyAutoScientist and + pyautolabs.github.io, both split/unresolvable and not named in the prompt. + Heart unreachable from this environment — ship gate leg 4 records NOT + EVALUATED. + + DEVIATION from the answered scope question: `pyautolabs.github.io` was + deliberately DE-REGISTERED rather than joined. Joining it means aliasing its + truncated head `pyautolabs`, which is the ORG name — `@PyAutoLabs/PyAutoFit` + would then resolve to the static site instead of PyAutoFit. The acceptance + criterion's other branch ("or is deliberately not registered") covers it, and + a guard pins both halves. Raised for review at ship time. diff --git a/draft/bug/pyautobrain/organ_repo_spellings_split_across_keys.md b/active/organ_repo_spellings_split_across_keys.md similarity index 99% rename from draft/bug/pyautobrain/organ_repo_spellings_split_across_keys.md rename to active/organ_repo_spellings_split_across_keys.md index 34988441..45c40534 100644 --- a/draft/bug/pyautobrain/organ_repo_spellings_split_across_keys.md +++ b/active/organ_repo_spellings_split_across_keys.md @@ -9,6 +9,7 @@ Autonomy: supervised Priority: normal Status: formalised Filed: 2026-08-24 +Issued: 2026-08-26 Found while shipping the refactor witness-map audit (@PyAutoBrain#269 / PR #271). diff --git a/dashboard.html b/dashboard.html index 4b375aab..f3e997ba 100644 --- a/dashboard.html +++ b/dashboard.html @@ -185,7 +185,7 @@

PyAutoMindDashboard

Intent. Priority. Flow.

Every task the Mind is holding. Tap a task's 📋 and its /start_dev command is on your clipboard — paste it into a Claude Code chat to route Claude straight to that task. Recent is the same work by date — what has been happening rather than what to do next.

- +

Last updated 2026-08-26. This page is generated from active/, draft/ and the registry files, so it is only as current as they are. dashboard_refresh.yml re-renders it on every push to main — that heals a stale page, but not a stale prompt: a task that shipped without its prompt advancing to complete/ keeps rendering here as pickable backlog. Reconciling those is the refresh below.

@PyAutoFit TransformedMessage.factor_gradient crashes on first call — issue #1501 — issued 2026-08-19 — HOLD — do not start dev. Fix-or-delete hangs off the PyAutoFit#1498 logpdf-contract

+

Organ repo spellings split across two normalised keys — issue #287 — issued 2026-08-26 — ready-to-ship — implemented and pushed on both branches; no PR opened

Parked markdown version

3 task(s) @@ -250,7 +251,7 @@

Planned

latent-nan-guard-honest-run — planned 2026-07-22

Backlog markdown version

-

136 filed prompts, not started — sorted most-pickable first (priority, then size). 25 of them belong to an epic and are listed only under Epics below.

+

135 filed prompts, not started — sorted most-pickable first (priority, then size). 25 of them belong to an epic and are listed only under Epics below.

feature — 27

Numba CPU likelihood phase 1: batched MGE convolution + operated-matrix caching✨ featureautoarraymediumsupervisedhigh

@@ -282,28 +283,6 @@

Backlog

Teach repos_sync --write to stamp organ config surfaces✨ featurepyautomindhardsupervisedlow

-bug — 19 -

Fix release JAX runtime compatibility and likelihood parity🐛 bughealth_fixestoo-largesupervisedhigh

-

Fix JIT quick-update visualization output regressions🐛 bughealth_fixestoo-largesupervisedhigh

-

Fix release result/sample parameter-path regressions🐛 bughealth_fixestoo-largesupervisedhigh

-

LogGaussianPrior misreports its own support as (-inf, inf)🐛 bugautofitsmallsupervisednormal

-

HowToGalaxy small API drifts: ellipse kwargs + plot_grid_lines (parked NEEDS_FIX)🐛 bughowtogalaxysmallsupervisednormal

-

generate.py deletes notebooks/ before rejecting an unknown project🐛 bugpyautohandssmallsupervisednormal

-

Three jax_likelihood pins are stale by ~1.24e-4 and fail the smoke gate…🐛 bugworkspacessmallsupervisednormal

-

PROBE: is Adapt's 4th-power coefficient dependence (double square) intentional?🐛 bugautoarraymediumsupervisednormal

-

JIT cache not hit in modeling_visualization delaunay/rectangular scripts🐛 bugautolensmediumsupervisednormal

-

interferometer/jax_grad/gradient.py: eager and jitted likelihoods diverge ~5e-7 on Python 3.13 only🐛 bugautolens_workspace_testmediumsupervisednormal

-

@PyAutoFit TransformedMessage.logpdf/pdf omit the transform Jacobian🐛 bugpriorsmediumsupervisednormal

-

Organ repo spellings split across two normalised keys🐛 bugpyautobrainlargesupervisednormal

-

Resolve release-profile timeout scripts deliberately🐛 bughealth_fixestoo-largesupervisednormal

-

@PyAutoFit Refactor: replace hand-rolled AbstractDensityTransform with tfp.bijectors / numpyro.distributions.transforms🐛 bugpriorstoo-largesupervisednormal

-

Priors & Messages cleanup — tracker🐛 bugpriorstoo-largesupervisednormal

-

autolens_workspace_test jax_likelihood pins: 4 scripts fail smoke on main🐛 bugautolenslowsupervisednormal

-

The reconstruction noise map describes a different estimator than the default solver🐛 bugautoarraymediumhuman-requiredlow

-

Point-source JSON datasets record no resolution regime🐛 bugpyautolensmediumsupervisedlow

-

interferometer/start_here.py OOM in nightly release-validation integrate leg🐛 bugautolens

-
-
maintenance — 23

autocti_workspace has no Navigator Check, so its CI can never roll…🧹 maintenancecimediumsupervisedhigh

Untrack the generated FITS test artifacts in autoarray🧹 maintenancelibrariessmallsupervisedmedium

@@ -347,6 +326,27 @@

Backlog

Cluster-scale gradient-search benchmark (Prodigy vs Nautilus, point-source)🔬 researchautolens_profiling

+bug — 18 +

Fix release JAX runtime compatibility and likelihood parity🐛 bughealth_fixestoo-largesupervisedhigh

+

Fix JIT quick-update visualization output regressions🐛 bughealth_fixestoo-largesupervisedhigh

+

Fix release result/sample parameter-path regressions🐛 bughealth_fixestoo-largesupervisedhigh

+

LogGaussianPrior misreports its own support as (-inf, inf)🐛 bugautofitsmallsupervisednormal

+

HowToGalaxy small API drifts: ellipse kwargs + plot_grid_lines (parked NEEDS_FIX)🐛 bughowtogalaxysmallsupervisednormal

+

generate.py deletes notebooks/ before rejecting an unknown project🐛 bugpyautohandssmallsupervisednormal

+

Three jax_likelihood pins are stale by ~1.24e-4 and fail the smoke gate…🐛 bugworkspacessmallsupervisednormal

+

PROBE: is Adapt's 4th-power coefficient dependence (double square) intentional?🐛 bugautoarraymediumsupervisednormal

+

JIT cache not hit in modeling_visualization delaunay/rectangular scripts🐛 bugautolensmediumsupervisednormal

+

interferometer/jax_grad/gradient.py: eager and jitted likelihoods diverge ~5e-7 on Python 3.13 only🐛 bugautolens_workspace_testmediumsupervisednormal

+

@PyAutoFit TransformedMessage.logpdf/pdf omit the transform Jacobian🐛 bugpriorsmediumsupervisednormal

+

Resolve release-profile timeout scripts deliberately🐛 bughealth_fixestoo-largesupervisednormal

+

@PyAutoFit Refactor: replace hand-rolled AbstractDensityTransform with tfp.bijectors / numpyro.distributions.transforms🐛 bugpriorstoo-largesupervisednormal

+

Priors & Messages cleanup — tracker🐛 bugpriorstoo-largesupervisednormal

+

autolens_workspace_test jax_likelihood pins: 4 scripts fail smoke on main🐛 bugautolenslowsupervisednormal

+

The reconstruction noise map describes a different estimator than the default solver🐛 bugautoarraymediumhuman-requiredlow

+

Point-source JSON datasets record no resolution regime🐛 bugpyautolensmediumsupervisedlow

+

interferometer/start_here.py OOM in nightly release-validation integrate leg🐛 bugautolens

+
+
docs — 12

multi_galaxy package: new regime package in autolens_workspace📖 docsautolenslargesupervisedhigh

Split lensing regimes: multi_galaxy / group / cluster (epic plan)📖 docsautolenstoo-largesupervisedhigh

@@ -393,6 +393,12 @@

Backlog The 50 newest things to happen to the work in hand, newest first — issued, parked, filed. Every other section on this page is laid out by state, which is exactly why none of them can answer “what has been happening?”. Shipped work is not here: it is read from complete/index.md, and a thousand records deep it would crowd out everything anyone can still act on. Showing the newest 10; … opens the next 10.

+ + + + + + @@ -425,12 +431,6 @@

Backlog 2026-08-24

- - - - - - diff --git a/dashboard.md b/dashboard.md index 9f6671a1..8d285589 100644 --- a/dashboard.md +++ b/dashboard.md @@ -42,10 +42,10 @@ anything you could not verify. | Where | Count | |-------|------:| -| [In flight](#in-flight) (`active/`) | 1 | +| [In flight](#in-flight) (`active/`) | 2 | | [Parked](#parked) (`parked.md`) | 3 | | [Planned](#planned) (`planned.md`) | 5 | -| [Backlog](#backlog) (`draft/`) | 136 | +| [Backlog](#backlog) (`draft/`) | 135 | ## Start here @@ -163,6 +163,14 @@ Issued — each has an open GitHub issue and usually a branch. The full record f +
📋 Organ repo spellings split across two normalised keys — issue #287 — issued 2026-08-26 — ready-to-ship — implemented and pushed on both branches; no PR opened + +``` +/start_dev active/organ_repo_spellings_split_across_keys.md +``` + +
+ ## Parked Started or scoped, not currently in flight — resume by moving the row back to `active.md`. Full detail in [`parked.md`](parked.md). @@ -247,7 +255,7 @@ Scoped but not started; some are not yet prompt files. Full detail in [`planned. ## Backlog -**136** filed prompts, not started. Each section is sorted most-pickable first (priority, then size). **25** of them belong to an epic and are listed only under [Epics](#epics) below. +**135** filed prompts, not started. Each section is sorted most-pickable first (priority, then size). **25** of them belong to an epic and are listed only under [Epics](#epics) below.
feature — 27 @@ -471,462 +479,454 @@ Scoped but not started; some are not yet prompt files. Full detail in [`planned.
-bug — 19 +maintenance — 23 -
📋 Fix release JAX runtime compatibility and likelihood parity — health_fixes · too-large · supervised · high +
📋 autocti_workspace has no Navigator Check, so its CI can never roll… — ci · medium · supervised · high ``` -/start_dev draft/bug/health_fixes/jax_runtime_and_parity.md +/start_dev draft/maintenance/ci/autocti_workspace_navigator_check.md ```
-
📋 Fix JIT quick-update visualization output regressions — health_fixes · too-large · supervised · high +
📋 Untrack the generated FITS test artifacts in autoarray — libraries · small · supervised · medium ``` -/start_dev draft/bug/health_fixes/jit_visualization_outputs.md +/start_dev draft/maintenance/libraries/untrack_generated_fits_test_artifacts.md ```
-
📋 Fix release result/sample parameter-path regressions — health_fixes · too-large · supervised · high +
📋 smoke_install.sh's stale jax<0.7 pin — CI is on the right jax… — ci · low · supervised · medium ``` -/start_dev draft/bug/health_fixes/samples_parameter_paths.md +/start_dev draft/maintenance/ci/smoke_install_stale_jax_pin.md ```
-
📋 LogGaussianPrior misreports its own support as (-inf, inf) — autofit · small · supervised · normal +
📋 autolens_workspace_developer rectangular experiments — Gut stash + rename — autolens_workspace_developer · small · supervised · normal ``` -/start_dev draft/bug/autofit/loggaussian_prior_declares_own_support.md +/start_dev draft/maintenance/autolens_workspace_developer/rectangular_experiments_gut_stash.md ```
-
📋 HowToGalaxy small API drifts: ellipse kwargs + plot_grid_lines (parked NEEDS_FIX) — howtogalaxy · small · supervised · normal +
📋 Mirror drifted library config keys into the workspace configs — workspaces · small · supervised · normal ``` -/start_dev draft/bug/howtogalaxy/small_api_drift_ellipse_and_plot_grid_lines.md +/start_dev draft/maintenance/workspaces/config_key_mirror_drift.md ```
-
📋 generate.py deletes notebooks/ before rejecting an unknown project — pyautohands · small · supervised · normal +
📋 euclid: CRLF has reached the HPC submit scripts AGENTS.md warns about — workspaces · small · supervised · normal ``` -/start_dev draft/bug/pyautohands/generate_rejects_autocti_after_deleting_notebooks.md +/start_dev draft/maintenance/workspaces/euclid_crlf_line_endings.md ```
-
📋 Three jax_likelihood pins are stale by ~1.24e-4 and fail the smoke gate… — workspaces · small · supervised · normal +
📋 Un-park imaging/features/scaling_relation/slam — the PyAutoArray#431 gate has cleared — workspaces · small · supervised · normal ``` -/start_dev draft/bug/workspaces/jax_likelihood_pins_stale_by_1e4.md +/start_dev draft/maintenance/workspaces/unpark_imaging_scaling_relation_slam.md ```
-
📋 PROBE: is Adapt's 4th-power coefficient dependence (double square) intentional? — autoarray · medium · supervised · normal +
📋 Un-park multi_galaxy/features/scaling_relation/slam once a capped run passes — workspaces · small · supervised · normal ``` -/start_dev draft/bug/autoarray/PROBE_adapt_double_square_coefficient.md +/start_dev draft/maintenance/workspaces/unpark_multi_galaxy_scaling_relation_slam.md ```
-
📋 JIT cache not hit in modeling_visualization delaunay/rectangular scripts — autolens · medium · supervised · normal +
📋 autolens_workspace_developer: broad stale-API rot (56 symbols, no CI) — autolens_workspace_developer · medium · supervised · normal ``` -/start_dev draft/bug/autolens/jit_cache_not_hit_modeling_visualization.md +/start_dev draft/maintenance/autolens_workspace_developer/stale_api_rot_audit.md ```
-
📋 interferometer/jax_grad/gradient.py: eager and jitted likelihoods diverge ~5e-7 on Python 3.13 only — autolens_workspace_test · medium · supervised · normal +
📋 Heart's local smoke runner cannot run any CTI workspace — no autocti… — ci · medium · supervised · normal ``` -/start_dev draft/bug/autolens_workspace_test/gradient_eager_jit_divergence_py313.md +/start_dev draft/maintenance/ci/heart_smoke_table_autocti.md ```
-
📋 @PyAutoFit TransformedMessage.logpdf/pdf omit the transform Jacobian — priors · medium · supervised · normal +
📋 run_smoke.py: three runner variants across 10 repos, no sync mechanism — ci · medium · supervised · normal ``` -/start_dev draft/bug/priors/15_transformed_message_logpdf_jacobian.md +/start_dev draft/maintenance/ci/run_smoke_copy_drift.md ```
-
📋 Organ repo spellings split across two normalised keys — pyautobrain · large · supervised · normal +
📋 wiki-currency's --check-version gate rots on every library main merge — ci · medium · supervised · normal ``` -/start_dev draft/bug/pyautobrain/organ_repo_spellings_split_across_keys.md +/start_dev draft/maintenance/ci/wiki_currency_check_version_gate.md ```
-
📋 Resolve release-profile timeout scripts deliberately — health_fixes · too-large · supervised · normal +
📋 Dependency-cap refresh 2026-08: safe bumps, astropy 8 decision, two dead deps — libraries · medium · supervised · normal ``` -/start_dev draft/bug/health_fixes/release_timeout_policy.md +/start_dev draft/maintenance/libraries/dep_cap_refresh_2026_08.md ```
-
📋 @PyAutoFit Refactor: replace hand-rolled AbstractDensityTransform with tfp.bijectors / numpyro.distributions.transforms — priors · too-large · supervised · normal +
📋 PyAutoMemory canonical-key TODO sweep — pyautomemory · medium · supervised · normal ``` -/start_dev draft/bug/priors/14_replace_transform_stack_with_bijectors.md +/start_dev draft/maintenance/pyautomemory/canonical_key_todo_sweep.md ```
-
📋 Priors & Messages cleanup — tracker — priors · too-large · supervised · normal +
📋 Capped smoke datasets were committed as if they were real — workspaces · medium · supervised · normal ``` -/start_dev draft/bug/priors/z_features.md +/start_dev draft/maintenance/workspaces/committed_capped_smoke_datasets.md ```
-
📋 autolens_workspace_test jax_likelihood pins: 4 scripts fail smoke on main — autolens · low · supervised · normal +
📋 autolens_profiling is now a mature project, with a good separation — autolens_profiling · large · supervised · normal ``` -/start_dev draft/bug/autolens/jax_likelihood_smoke_pins_stale.md +/start_dev draft/maintenance/autolens_profiling/polish.md ```
-
📋 The reconstruction noise map describes a different estimator than the default solver — autoarray · medium · human-required · low +
📋 Auto-request GitHub Copilot code review on every PR, org-wide — ci · large · supervised · normal ``` -/start_dev draft/bug/autoarray/reconstruction_noise_map_solver_mismatch.md +/start_dev draft/maintenance/ci/copilot_auto_review.md ```
-
📋 Point-source JSON datasets record no resolution regime — pyautolens · medium · supervised · low +
📋 autolens_workspace — workspaces · too-large · supervised · normal ``` -/start_dev draft/bug/pyautolens/point_source_json_datasets_record_no_regime.md +/start_dev draft/maintenance/workspaces/read_through_issues.md ```
-
📋 interferometer/start_here.py OOM in nightly release-validation integrate leg — autolens +
📋 pynufft removal: unswept downstream residue (1 hard break + stale docs/CI) — workspaces · low-medium · supervised · normal ``` -/start_dev draft/bug/autolens/interferometer_release_leg_oom.md +/start_dev draft/maintenance/workspaces/pynufft_removal_downstream_residue.md ```
-
- -
-maintenance — 23 - -
📋 autocti_workspace has no Navigator Check, so its CI can never roll… — ci · medium · supervised · high +
📋 Phase 3: stop installing pynufft in Hands/Heart CI and PyAutoCTI install docs — workspaces · low · supervised · normal ``` -/start_dev draft/maintenance/ci/autocti_workspace_navigator_check.md +/start_dev draft/maintenance/workspaces/pynufft_removal_downstream_residue_phase_3_ci_install_docs.md ```
-
📋 Untrack the generated FITS test artifacts in autoarray — libraries · small · supervised · medium +
📋 dataset/imaging/jwst_lw is untracked because the gitignore was never extended for it — autolens_profiling · small · supervised · low ``` -/start_dev draft/maintenance/libraries/untrack_generated_fits_test_artifacts.md +/start_dev draft/maintenance/autolens_profiling/jwst_lw_untracked_gitignore_gap.md ```
-
📋 smoke_install.sh's stale jax<0.7 pin — CI is on the right jax… — ci · low · supervised · medium +
📋 cosmos_web_ring stores boolean masks as float64, wasting ~3.4 MB of the repo's… — autolens_workspace · small · supervised · low ``` -/start_dev draft/maintenance/ci/smoke_install_stale_jax_pin.md +/start_dev draft/maintenance/autolens_workspace/cosmos_web_ring_mask_dtype.md ```
-
📋 autolens_workspace_developer rectangular experiments — Gut stash + rename — autolens_workspace_developer · small · supervised · normal +
📋 Regenerate setup_notebook-drifted notebooks in autogalaxy/autofit/HowToFit workspaces — workspaces · small · supervised · low ``` -/start_dev draft/maintenance/autolens_workspace_developer/rectangular_experiments_gut_stash.md +/start_dev draft/maintenance/workspaces/notebook_setup_notebook_drift_siblings.md ```
-
📋 Mirror drifted library config keys into the workspace configs — workspaces · small · supervised · normal - -``` -/start_dev draft/maintenance/workspaces/config_key_mirror_drift.md -``` -
-
📋 euclid: CRLF has reached the HPC submit scripts AGENTS.md warns about — workspaces · small · supervised · normal +
+research — 14 + +
📋 Deep research: Can we speed up Delaunay in PyAutoArray? — autoarray · too-large · supervised · high ``` -/start_dev draft/maintenance/workspaces/euclid_crlf_line_endings.md +/start_dev draft/research/autoarray/delaunay_research.md ```
-
📋 Un-park imaging/features/scaling_relation/slam — the PyAutoArray#431 gate has cleared — workspaces · small · supervised · normal +
📋 Delaunay-family JAX modules never hit the persistent compilation cache — autoarray · medium · supervised · medium ``` -/start_dev draft/maintenance/workspaces/unpark_imaging_scaling_relation_slam.md +/start_dev draft/research/autoarray/delaunay_callback_persistent_cache_miss.md ```
-
📋 Un-park multi_galaxy/features/scaling_relation/slam once a capped run passes — workspaces · small · supervised · normal +
📋 Quick-update plotting cost — minutes per update, and it is not JAX… — autolens · medium · supervised · medium ``` -/start_dev draft/maintenance/workspaces/unpark_multi_galaxy_scaling_relation_slam.md +/start_dev draft/research/autolens/quick_update_plotting_cost.md ```
-
📋 autolens_workspace_developer: broad stale-API rot (56 symbols, no CI) — autolens_workspace_developer · medium · supervised · normal +
📋 Use readthedocs or migrate to GitHub docs — autobuild · small · supervised · normal ``` -/start_dev draft/maintenance/autolens_workspace_developer/stale_api_rot_audit.md +/start_dev draft/research/autobuild/git_docs.md ```
-
📋 Heart's local smoke runner cannot run any CTI workspace — no autocti… — ci · medium · supervised · normal +
📋 Re-baseline the slacs0008 acceptance parity after the HAP-dedupe fix — pyautoreduce · small · supervised · normal ``` -/start_dev draft/maintenance/ci/heart_smoke_table_autocti.md +/start_dev draft/research/pyautoreduce/acceptance_noise_rebaseline.md ```
-
📋 run_smoke.py: three runner variants across 10 repos, no sync mechanism — ci · medium · supervised · normal +
📋 Kernel-CDF bandwidth defaults — config-dependent quality, investigate adaptivity — autoarray · medium · supervised · normal ``` -/start_dev draft/maintenance/ci/run_smoke_copy_drift.md +/start_dev draft/research/autoarray/rectangular_kernel_bandwidth_defaults.md ```
-
📋 wiki-currency's --check-version gate rots on every library main merge — ci · medium · supervised · normal +
📋 We have lots of examples which profile how long JAX — autolens_workspace_developer · medium · supervised · normal ``` -/start_dev draft/maintenance/ci/wiki_currency_check_version_gate.md +/start_dev draft/research/autolens_workspace_developer/jax_jit_profiling.md ```
-
📋 Dependency-cap refresh 2026-08: safe bumps, astropy 8 decision, two dead deps — libraries · medium · supervised · normal +
📋 Is Intel macOS a supported platform, and what is the numpy-only contract? — libraries · medium · supervised · normal ``` -/start_dev draft/maintenance/libraries/dep_cap_refresh_2026_08.md +/start_dev draft/research/libraries/intel_macos_support_policy.md ```
-
📋 PyAutoMemory canonical-key TODO sweep — pyautomemory · medium · supervised · normal +
📋 Checkerboard PSF-mismatch residual diagnostic — research + document + ingest papers — pyautomemory · medium · supervised · normal ``` -/start_dev draft/maintenance/pyautomemory/canonical_key_todo_sweep.md +/start_dev draft/research/pyautomemory/checkerboard_psf_mismatch_residual_diagnostic.md ```
-
📋 Capped smoke datasets were committed as if they were real — workspaces · medium · supervised · normal +
📋 autofit_profiling: bootstrap the repo + general PyAutoFit profiling epic — autofit · large · supervised · normal ``` -/start_dev draft/maintenance/workspaces/committed_capped_smoke_datasets.md +/start_dev draft/research/autofit/autofit_profiling_bootstrap.md ```
-
📋 autolens_profiling is now a mature project, with a good separation — autolens_profiling · large · supervised · normal +
📋 Multi-band compile census completion — A100/multi-core + hetero GPU rows — autolens_profiling · small · supervised · low ``` -/start_dev draft/maintenance/autolens_profiling/polish.md +/start_dev draft/research/autolens_profiling/multiband_compile_census_completion.md ```
-
📋 Auto-request GitHub Copilot code review on every PR, org-wide — ci · large · supervised · normal +
📋 Chase the ~6% flux scale between PyAutoReduce and legacy SLACS reductions — pyautoreduce · medium · supervised · low ``` -/start_dev draft/maintenance/ci/copilot_auto_review.md +/start_dev draft/research/pyautoreduce/legacy_flux_scale_parity.md ```
-
📋 autolens_workspace — workspaces · too-large · supervised · normal +
📋 PyAutoArray Delaunay interpolator's pure_callback vs vmap — minor efficiency follow-up — autoarray · too-large · supervised · low ``` -/start_dev draft/maintenance/workspaces/read_through_issues.md +/start_dev draft/research/autoarray/delaunay_interpolator_pure_callback_vmap_memory.md ```
-
📋 pynufft removal: unswept downstream residue (1 hard break + stale docs/CI) — workspaces · low-medium · supervised · normal +
📋 Cluster-scale gradient-search benchmark (Prodigy vs Nautilus, point-source) — autolens_profiling ``` -/start_dev draft/maintenance/workspaces/pynufft_removal_downstream_residue.md +/start_dev draft/research/autolens_profiling/cluster_gradient_search_benchmark.md ```
-
📋 Phase 3: stop installing pynufft in Hands/Heart CI and PyAutoCTI install docs — workspaces · low · supervised · normal +
+ +
+bug — 18 + +
📋 Fix release JAX runtime compatibility and likelihood parity — health_fixes · too-large · supervised · high ``` -/start_dev draft/maintenance/workspaces/pynufft_removal_downstream_residue_phase_3_ci_install_docs.md +/start_dev draft/bug/health_fixes/jax_runtime_and_parity.md ```
-
📋 dataset/imaging/jwst_lw is untracked because the gitignore was never extended for it — autolens_profiling · small · supervised · low +
📋 Fix JIT quick-update visualization output regressions — health_fixes · too-large · supervised · high ``` -/start_dev draft/maintenance/autolens_profiling/jwst_lw_untracked_gitignore_gap.md +/start_dev draft/bug/health_fixes/jit_visualization_outputs.md ```
-
📋 cosmos_web_ring stores boolean masks as float64, wasting ~3.4 MB of the repo's… — autolens_workspace · small · supervised · low +
📋 Fix release result/sample parameter-path regressions — health_fixes · too-large · supervised · high ``` -/start_dev draft/maintenance/autolens_workspace/cosmos_web_ring_mask_dtype.md +/start_dev draft/bug/health_fixes/samples_parameter_paths.md ```
-
📋 Regenerate setup_notebook-drifted notebooks in autogalaxy/autofit/HowToFit workspaces — workspaces · small · supervised · low +
📋 LogGaussianPrior misreports its own support as (-inf, inf) — autofit · small · supervised · normal ``` -/start_dev draft/maintenance/workspaces/notebook_setup_notebook_drift_siblings.md +/start_dev draft/bug/autofit/loggaussian_prior_declares_own_support.md ```
-
- -
-research — 14 - -
📋 Deep research: Can we speed up Delaunay in PyAutoArray? — autoarray · too-large · supervised · high +
📋 HowToGalaxy small API drifts: ellipse kwargs + plot_grid_lines (parked NEEDS_FIX) — howtogalaxy · small · supervised · normal ``` -/start_dev draft/research/autoarray/delaunay_research.md +/start_dev draft/bug/howtogalaxy/small_api_drift_ellipse_and_plot_grid_lines.md ```
-
📋 Delaunay-family JAX modules never hit the persistent compilation cache — autoarray · medium · supervised · medium +
📋 generate.py deletes notebooks/ before rejecting an unknown project — pyautohands · small · supervised · normal ``` -/start_dev draft/research/autoarray/delaunay_callback_persistent_cache_miss.md +/start_dev draft/bug/pyautohands/generate_rejects_autocti_after_deleting_notebooks.md ```
-
📋 Quick-update plotting cost — minutes per update, and it is not JAX… — autolens · medium · supervised · medium +
📋 Three jax_likelihood pins are stale by ~1.24e-4 and fail the smoke gate… — workspaces · small · supervised · normal ``` -/start_dev draft/research/autolens/quick_update_plotting_cost.md +/start_dev draft/bug/workspaces/jax_likelihood_pins_stale_by_1e4.md ```
-
📋 Use readthedocs or migrate to GitHub docs — autobuild · small · supervised · normal +
📋 PROBE: is Adapt's 4th-power coefficient dependence (double square) intentional? — autoarray · medium · supervised · normal ``` -/start_dev draft/research/autobuild/git_docs.md +/start_dev draft/bug/autoarray/PROBE_adapt_double_square_coefficient.md ```
-
📋 Re-baseline the slacs0008 acceptance parity after the HAP-dedupe fix — pyautoreduce · small · supervised · normal +
📋 JIT cache not hit in modeling_visualization delaunay/rectangular scripts — autolens · medium · supervised · normal ``` -/start_dev draft/research/pyautoreduce/acceptance_noise_rebaseline.md +/start_dev draft/bug/autolens/jit_cache_not_hit_modeling_visualization.md ```
-
📋 Kernel-CDF bandwidth defaults — config-dependent quality, investigate adaptivity — autoarray · medium · supervised · normal +
📋 interferometer/jax_grad/gradient.py: eager and jitted likelihoods diverge ~5e-7 on Python 3.13 only — autolens_workspace_test · medium · supervised · normal ``` -/start_dev draft/research/autoarray/rectangular_kernel_bandwidth_defaults.md +/start_dev draft/bug/autolens_workspace_test/gradient_eager_jit_divergence_py313.md ```
-
📋 We have lots of examples which profile how long JAX — autolens_workspace_developer · medium · supervised · normal +
📋 @PyAutoFit TransformedMessage.logpdf/pdf omit the transform Jacobian — priors · medium · supervised · normal ``` -/start_dev draft/research/autolens_workspace_developer/jax_jit_profiling.md +/start_dev draft/bug/priors/15_transformed_message_logpdf_jacobian.md ```
-
📋 Is Intel macOS a supported platform, and what is the numpy-only contract? — libraries · medium · supervised · normal +
📋 Resolve release-profile timeout scripts deliberately — health_fixes · too-large · supervised · normal ``` -/start_dev draft/research/libraries/intel_macos_support_policy.md +/start_dev draft/bug/health_fixes/release_timeout_policy.md ```
-
📋 Checkerboard PSF-mismatch residual diagnostic — research + document + ingest papers — pyautomemory · medium · supervised · normal +
📋 @PyAutoFit Refactor: replace hand-rolled AbstractDensityTransform with tfp.bijectors / numpyro.distributions.transforms — priors · too-large · supervised · normal ``` -/start_dev draft/research/pyautomemory/checkerboard_psf_mismatch_residual_diagnostic.md +/start_dev draft/bug/priors/14_replace_transform_stack_with_bijectors.md ```
-
📋 autofit_profiling: bootstrap the repo + general PyAutoFit profiling epic — autofit · large · supervised · normal +
📋 Priors & Messages cleanup — tracker — priors · too-large · supervised · normal ``` -/start_dev draft/research/autofit/autofit_profiling_bootstrap.md +/start_dev draft/bug/priors/z_features.md ```
-
📋 Multi-band compile census completion — A100/multi-core + hetero GPU rows — autolens_profiling · small · supervised · low +
📋 autolens_workspace_test jax_likelihood pins: 4 scripts fail smoke on main — autolens · low · supervised · normal ``` -/start_dev draft/research/autolens_profiling/multiband_compile_census_completion.md +/start_dev draft/bug/autolens/jax_likelihood_smoke_pins_stale.md ```
-
📋 Chase the ~6% flux scale between PyAutoReduce and legacy SLACS reductions — pyautoreduce · medium · supervised · low +
📋 The reconstruction noise map describes a different estimator than the default solver — autoarray · medium · human-required · low ``` -/start_dev draft/research/pyautoreduce/legacy_flux_scale_parity.md +/start_dev draft/bug/autoarray/reconstruction_noise_map_solver_mismatch.md ```
-
📋 PyAutoArray Delaunay interpolator's pure_callback vs vmap — minor efficiency follow-up — autoarray · too-large · supervised · low +
📋 Point-source JSON datasets record no resolution regime — pyautolens · medium · supervised · low ``` -/start_dev draft/research/autoarray/delaunay_interpolator_pure_callback_vmap_memory.md +/start_dev draft/bug/pyautolens/point_source_json_datasets_record_no_regime.md ```
-
📋 Cluster-scale gradient-search benchmark (Prodigy vs Nautilus, point-source) — autolens_profiling +
📋 interferometer/start_here.py OOM in nightly release-validation integrate leg — autolens ``` -/start_dev draft/research/autolens_profiling/cluster_gradient_search_benchmark.md +/start_dev draft/bug/autolens/interferometer_release_leg_oom.md ```
@@ -1188,12 +1188,12 @@ The 50 newest things to happen to the work in hand, newest first — issued, par | Date | Event | Task | |------|-------|------| +| 2026-08-26 | issued | Organ repo spellings split across two normalised keys | | 2026-08-24 | filed | wiki-currency's --check-version gate rots on every library main merge | | 2026-08-24 | filed | interferometer/jax_grad/gradient.py: eager and jitted likelihoods… | | 2026-08-24 | filed | euclid: CRLF has reached the HPC submit scripts AGENTS.md warns about | | 2026-08-24 | filed | autocti_workspace has no Navigator Check, so its CI can never roll… | | 2026-08-24 | filed | Un-park multi_galaxy/features/scaling_relation/slam once a capped run… | -| 2026-08-24 | filed | Organ repo spellings split across two normalised keys | | 2026-08-24 | filed | Induct PyAutoReduce into the PyAutoHands release machinery (date… | | 2026-08-24 | filed | Heart's local smoke runner cannot run any CTI workspace — no autocti… | | 2026-08-23 | filed | pynufft removal: unswept downstream residue (1 hard break + stale… | diff --git a/repos.yaml b/repos.yaml index c14381d9..001d88c4 100644 --- a/repos.yaml +++ b/repos.yaml @@ -55,6 +55,16 @@ repos: # repo currently uses it (Nerves/PyAutoNerves, its former user, is now a full # organ); it is kept for a future library that belongs on the public front # door without being an organ. + # + # `package:` names the import/PyPI package a repo ships, and is absent where + # it ships none. It is identity, not policy: it is the OTHER name the repo is + # known by, and prompts use it far more than the repo name (`@autofit`, not + # `@PyAutoFit`). PyAutoBrain derives its canonical routing key from it — + # the package name where a repo ships one, the repo name where it does not — + # so both spellings of a repo reach the same key instead of splitting across + # two (PyAutoBrain#287, the fourth instance of that defect). Adding a package + # here is what makes a new repo's spellings join automatically; omitting one a + # repo really ships re-opens the split. PyAutoMind: github: PyAutoLabs/PyAutoMind category: organ @@ -93,6 +103,7 @@ repos: public_role: "Holds stale branches, dead code and other condemned material as recoverable Git references before it is permanently removed." PyAutoNerves: github: PyAutoLabs/PyAutoNerves + package: autonerves category: organ organ: Nerves role: "The Nerves — the configuration/serialization layer connecting workspace conventions to libraries (layered config, version handshake, test_mode), delivered as the `autonerves` package." @@ -101,26 +112,32 @@ repos: # --- scientific libraries ---------------------------------------------- PyAutoFit: github: PyAutoLabs/PyAutoFit + package: autofit category: library role: "Model-fitting / non-linear search / aggregator library." PyAutoArray: github: PyAutoLabs/PyAutoArray + package: autoarray category: library role: "Data structures (arrays, grids, masks), inversions, interferometry." PyAutoGalaxy: github: PyAutoLabs/PyAutoGalaxy + package: autogalaxy category: library role: "Galaxy light/mass profiles and galaxy modelling." PyAutoLens: github: PyAutoLabs/PyAutoLens + package: autolens category: library role: "Strong-lensing modelling built on the libraries above." PyAutoReduce: github: PyAutoLabs/PyAutoReduce + package: autoreduce category: library role: "Data reduction of HST (and future JWST/other) imaging into modeling-ready datasets for PyAutoLens/PyAutoGalaxy." PyAutoCTI: github: PyAutoLabs/PyAutoCTI + package: autocti category: library role: "Charge Transfer Inefficiency (CTI) calibration and modelling for CCD imaging (arctic clocking; Euclid VIS heritage)."
2026-08-26issuedOrgan repo spellings split across two normalised keys
2026-08-24 filed wiki-currency's --check-version gate rots on every library main mergefiledOrgan repo spellings split across two normalised keys
2026-08-24filed Induct PyAutoReduce into the PyAutoHands release machinery (date…