Issues

• Snakemake slurm cluster status in version 9.6.3

  Snakemake-Profiles/slurm#121 · Filter by author jessijessi opened on Oct 22, 2025
  4

• Setting out based on log directive from snakemake

  Snakemake-Profiles/slurm#120 · Filter by author shashwatsahay opened on Nov 27, 2024

• Compatibility with snakemake version 8.0 and higher

  Snakemake-Profiles/slurm#117 · Filter by author TBradley27 opened on Jan 3, 2024
  11

• How do I make mem_mb_per_cpu work?

  Snakemake-Profiles/slurm#112 · Filter by author hepcat72 opened on Jul 18, 2023
  8

• slurm-status.py: could not query side car

  Snakemake-Profiles/slurm#111 · Filter by author mhorlacher opened on May 30, 2023

• Snakemake and Slurm

  Snakemake-Profiles/slurm#110 · Filter by author mweberr opened on Feb 21, 2023
  1

• Jobs submitted to cluster fail without explanation

  Snakemake-Profiles/slurm#109 · Filter by author jonahcullen opened on Jan 18, 2023
  9

• mem setting in resource is not working due to default mem_mb argument is generated in latest version of snakemake

  Snakemake-Profiles/slurm#107 · Filter by author y9c opened on Nov 16, 2022
  3

• How to use with MPI jobs?

  Snakemake-Profiles/slurm#103 · Filter by author bilke opened on Sep 14, 2022
  1

• Profile not working well on AWS ParallelCluster with Slurm

  Snakemake-Profiles/slurm#102 · Filter by author cbrueffer opened on Jul 20, 2022

• Sidecar shuts down too early when pressing Ctrl-C

  Snakemake-Profiles/slurm#99 · Filter by author holtgrewe opened on Jun 24, 2022
  1

• Provided cores differ to what's passed in the CLI

  Snakemake-Profiles/slurm#97 · Filter by author vinisalazar opened on May 26, 2022
  1

• SLURM --tasks-per-node, --cpus-per-task, etc.

  Snakemake-Profiles/slurm#94 · Filter by author whophil opened on May 18, 2022
  2

• Problems with Snakemake 5.6.0 standard resources

  Snakemake-Profiles/slurm#89 · Filter by author holtgrewe opened on Mar 30, 2022
  4

• slurm_utils.py submit_job function is very slow

  Snakemake-Profiles/slurm#79 · Filter by author atermanini opened on Oct 28, 2021
  14