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feat(packaging): introduce uv workspace structure for aignostics-sdk split
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‎packages/aignostics-sdk/pyproject.toml‎

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[project]
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name = "aignostics-sdk"
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version = "1.4.0"
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description = "🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library."
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readme = "../../README.md"
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authors = [
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{ name = "Helmut Hoffer von Ankershoffen", email = "helmut@aignostics.com" },
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{ name = "Andreas Kunft", email = "andreas@aignostics.com" },
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]
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license = { file = "../../LICENSE" }
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keywords = [
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"aignostics",
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"atlas",
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"whole-slide-imaging",
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"machine-learning",
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"digital-pathology",
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"medical-imaging",
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"qupath",
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"dicom",
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"pydicom",
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"openslide",
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"image-data-commons",
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"act",
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"codecov",
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"copier",
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"cyclonedx",
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"devcontainer",
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"detect-secrets",
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"docker",
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"git-cliff",
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"jupyter",
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"marimo",
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"mypy",
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"nox",
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"nicegui",
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"oe-python-template",
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"pip-audit",
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"pip-licenses",
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"pre-commit",
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"pydantic",
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"pytest",
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"python",
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"pypi",
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"readthedocs",
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"ruff",
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"sonarqube",
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"sonarcloud",
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"sphinx",
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"typer",
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"uv",
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]
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classifiers = [
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"Development Status :: 3 - Alpha",
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"Intended Audience :: Developers",
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"Intended Audience :: End Users/Desktop",
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"Programming Language :: Python",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3.11",
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"Programming Language :: Python :: 3.12",
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"Programming Language :: Python :: 3.13",
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"Programming Language :: Python :: 3.14",
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"License :: OSI Approved :: MIT License",
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"Operating System :: MacOS :: MacOS X",
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"Operating System :: POSIX :: Linux",
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"Operating System :: Microsoft :: Windows",
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"Framework :: Pydantic",
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"Framework :: Pytest",
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"Typing :: Typed",
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"Natural Language :: English",
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]
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# WARNING: The upper bound of requires-python is *not* respected by uvx
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requires-python = ">=3.11, <3.15"
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dependencies = [
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# From Template
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"fastapi[all,standard]>=0.123.10",
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"humanize>=4.14.0,<5",
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"nicegui[native]>=3.11.0,<4",
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"packaging>=26,<27",
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"platformdirs>=4.5.1,<5",
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"psutil>=7.1.3,<8",
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"pydantic-settings>=2.12.0,<3",
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"pywin32>=311,<312; sys_platform == 'win32'",
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"pyyaml>=6.0.3,<7",
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"sentry-sdk>=2.47.0,<3",
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"typer>=0.20.0,<1",
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# Custom
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"boto3>=1.42.4,<2",
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"certifi>=2025.11.12",
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"defusedxml>=0.7.1",
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"dicom-validator>=0.7.3,<1",
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"dicomweb-client[gcp]>=0.59.3,<1",
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"duckdb>=1.4.2,<=2",
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"google-cloud-storage>=3.6.0,<4",
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"crc32c>=2.8,<3",
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"highdicom>=0.26.1,<1; python_version < '3.14'",
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"html-sanitizer>=2.6.0,<3",
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"httpx>=0.28.1,<1",
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"idc-index-data==24.0.3",
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"ijson>=3.4.0.post0,<4",
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"jsf>=0.11.2,<1",
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"jsonschema[format-nongpl]>=4.25.1,<5",
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"loguru>=0.7.3,<1",
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"openslide-bin>=4.0.0.10,<5",
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"openslide-python>=1.4.3,<2",
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"pandas>=2.3.3,<4",
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"platformdirs>=4.3.2,<5",
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"procrastinate>=3.5.3",
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"fastparquet>=2026.3.0,<2026.4.0; python_version < '3.14'",
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"pyarrow>=23.0.1,<24; python_version >= '3.14'",
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"pyjwt[crypto]>=2.12.0,<3",
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"python-dateutil>=2.9.0.post0,<3",
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"requests>=2.33.0,<3",
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"requests-oauthlib>=2.0.0,<3",
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"s5cmd>=0.3.3,<1",
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"semver>=3.0.4,<4",
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"shapely>=2.1.2,<3",
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"tenacity>=9.1.2,<10",
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"tqdm>=4.67.1,<5",
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"truststore>=0.10.4,<1",
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"urllib3>=2.6.3,<3",
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"wsidicom>=0.28.1,<1",
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"fastmcp>=3.2.0,<4",
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# Transitive overrides
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"rfc3987; sys_platform == 'never'",
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"h11>=0.16.0",
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"tornado>=6.5.5",
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"urllib3>=2.5.0",
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"pillow>=12.2.0",
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"aiohttp>=3.13.4",
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"starlette>=1.0.1",
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"lxml>=6.1.0",
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"filelock>=3.20.3",
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"marshmallow>=3.26.2",
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"pygments>=2.20.0",
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"cryptography>=46.0.7",
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"pydicom>=3.0.2",
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"pyasn1>=0.6.3",
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"lxml-html-clean>=0.4.4",
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"python-multipart>=0.0.26",
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"protobuf>=6.33.5",
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]
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[project.optional-dependencies]
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pyinstaller = ["pyinstaller>=6.14.0,<7"]
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jupyter = [
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"jupyter>=1.1.1,<2",
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"jupyter-core>=5.8.1",
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"jupyterlab>=4.4.9",
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"nbconvert>=7.17.1",
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]
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marimo = [
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"cloudpathlib>=0.23.0,<1",
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"ipython>=9.8.0,<10",
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"marimo>=0.23.0,<1",
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"matplotlib>=3.10.7,<4",
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"shapely>=2.1.0,<3",
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]
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qupath = []
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[project.scripts]
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aignostics-sdk = "aignostics_sdk.cli:cli"
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[build-system]
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requires = ["hatchling==1.29.0"]
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build-backend = "hatchling.build"
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[tool.hatch.build]
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include = ["src/*"]
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# TODO(Phase 5): Bundle codegen/out/aignx into wheel. Hatchling does not support
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# paths outside the project root (../../codegen/out/*). Options: symlink, copy
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# via a build hook, or use a hatch plugin. Deferred to the codegen migration phase.
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[tool.hatch.build.targets.wheel]
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packages = ["src/aignostics_sdk"]
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[tool.hatch.metadata]
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allow-direct-references = true

‎packages/aignostics-sdk/src/aignostics_sdk/__init__.py‎

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"""Package stub — source migrated in Phase 2."""

‎packages/aignostics/pyproject.toml‎

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[project]
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name = "aignostics"
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version = "1.4.0"
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description = "🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library."
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readme = "../../README.md"
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authors = [
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{ name = "Helmut Hoffer von Ankershoffen", email = "helmut@aignostics.com" },
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{ name = "Andreas Kunft", email = "andreas@aignostics.com" },
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]
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license = { file = "../../LICENSE" }
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keywords = [
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"aignostics",
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"atlas",
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"whole-slide-imaging",
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"machine-learning",
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"digital-pathology",
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"medical-imaging",
19+
"qupath",
20+
"dicom",
21+
"pydicom",
22+
"openslide",
23+
"image-data-commons",
24+
"act",
25+
"codecov",
26+
"copier",
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"cyclonedx",
28+
"devcontainer",
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"detect-secrets",
30+
"docker",
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"git-cliff",
32+
"jupyter",
33+
"marimo",
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"mypy",
35+
"nox",
36+
"nicegui",
37+
"oe-python-template",
38+
"pip-audit",
39+
"pip-licenses",
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"pre-commit",
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"pydantic",
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"pytest",
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"python",
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"pypi",
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"readthedocs",
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"ruff",
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"sonarqube",
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"sonarcloud",
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"sphinx",
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"typer",
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"uv",
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]
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classifiers = [
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"Development Status :: 3 - Alpha",
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"Intended Audience :: Developers",
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"Intended Audience :: End Users/Desktop",
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"Programming Language :: Python",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3.11",
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"Programming Language :: Python :: 3.12",
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"Programming Language :: Python :: 3.13",
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"Programming Language :: Python :: 3.14",
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"License :: OSI Approved :: MIT License",
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"Operating System :: MacOS :: MacOS X",
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"Operating System :: POSIX :: Linux",
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"Operating System :: Microsoft :: Windows",
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"Framework :: Pydantic",
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"Framework :: Pytest",
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"Typing :: Typed",
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"Natural Language :: English",
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]
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# WARNING: The upper bound of requires-python is *not* respected by uvx
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requires-python = ">=3.11, <3.15"
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dependencies = [
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"aignostics-sdk==1.4.0",
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# Heavy deps will be moved here from aignostics-sdk in Phase 5
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]
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[project.optional-dependencies]
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pyinstaller = ["pyinstaller>=6.14.0,<7"]
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jupyter = [
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"jupyter>=1.1.1,<2",
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"jupyter-core>=5.8.1",
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"jupyterlab>=4.4.9",
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"nbconvert>=7.17.1",
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]
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marimo = [
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"cloudpathlib>=0.23.0,<1",
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"ipython>=9.8.0,<10",
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"marimo>=0.23.0,<1",
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"matplotlib>=3.10.7,<4",
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"shapely>=2.1.0,<3",
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]
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qupath = []
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[project.scripts]
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aignostics = "aignostics.cli:cli"
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[project.urls]
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Homepage = "https://aignostics.readthedocs.io/en/latest/"
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Documentation = "https://aignostics.readthedocs.io/en/latest/"
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Source = "https://github.com/aignostics/python-sdk"
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Changelog = "https://github.com/aignostics/python-sdk/releases"
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Issues = "https://github.com/aignostics/python-sdk/issues"
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[build-system]
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requires = ["hatchling==1.29.0"]
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build-backend = "hatchling.build"
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[tool.hatch.build]
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include = ["src/*"]
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[tool.hatch.build.targets.wheel]
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packages = ["src/aignostics"]
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[tool.hatch.metadata]
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allow-direct-references = true
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[tool.uv.sources]
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aignostics-sdk = { workspace = true }

‎packages/aignostics/src/aignostics/__init__.py‎

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"""Package stub — source migrated in Phase 2."""

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