README.md

Examples

Try medbots without your own PDFs using the synthetic demo corpus.

Quick start (no PDF files)

From the repository root (with pip install -e . done):

medbots structure --bot-root examples/demo-instance
medbots pipeline --bot-root examples/demo-instance
medbots validate --corpus examples/demo-instance/structured_database

Expected: 3 doc_text/*.md files (EMIAS, Medsi, Gemotest biochemistry), ~46 rows in LABS_NORMALIZED.json.

The demo uses redacted pdf_text/ fixtures only — see structured_database/manifest.json (meta.demo: true). No binaries in sources/.

Compare output

After structure, compare against expected/doc_text_emias_excerpt.md.

Full workflow with your PDFs

medbots init ~/my-health
# copy PDFs → sources/{emias,medsi,gemotest}/
medbots scan --bot-root ~/my-health
medbots extract-text --bot-root ~/my-health
medbots structure --bot-root ~/my-health
medbots pipeline --bot-root ~/my-health

See docs/PARSERS.md.