Issues

• Update Salmon index

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#27 · Filter by author AshKernow opened on Mar 20, 2024

• Add patchwork to Visualisations session

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#26 · Filter by author AshKernow opened on Mar 19, 2024

• Switch to pheatmap from ComplexHeatmap

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#25 · Filter by author AshKernow opened on Mar 19, 2024

• Add back tx2gene file creation

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#21 · Filter by author AbbiEdwards opened on Jun 26, 2023

• timing of exploratory analysis (day 1)

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#20 · Filter by author tavareshugo opened on Jun 23, 2023
  1

• GSEA: update to mouse halmark genes

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#18 · Filter by author tavareshugo opened on Dec 12, 2022
  2

• Recap presentation to close the course

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#17 · Filter by author tavareshugo opened on Dec 12, 2022

• Extended exercise at the end

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#16 · Filter by author tavareshugo opened on Dec 12, 2022

• Cheatsheet for Unix and explanation of command docs

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#15 · Filter by author tavareshugo opened on Dec 12, 2022

• LRT vs Wald tests

  discussion
  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#14 · Filter by author tavareshugo opened on Nov 25, 2022
  1

• Create salmon_outputs directory in Data Exploration

  bugeasy
  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#13 · Filter by author tavareshugo opened on Nov 25, 2022
  1

• Packages for annotations

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#11 · Filter by author TomSmithCGAT opened on May 12, 2022
  1

• Too much focus on transformation in the RNA-Seq exploration section

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#10 · Filter by author TomSmithCGAT opened on May 10, 2022
  4

• add section with software installation instructions

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#8 · Filter by author tavareshugo opened on May 9, 2022

• Introductory slides for Day 1 Illumina sequencing- basic concept is wrong

  bioinformatics-core-shared-training/Bulk_RNAseq_Course_Base#5 · Filter by author Sankarinam10san opened on Feb 16, 2022