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libgcc-ng >=12 - libzlib >=1.2.13,<2.0.0a0 - arch: x86_64 - platform: linux license: TCL license_family: BSD purls: [] diff --git a/pyproject.toml b/pyproject.toml index a3a536a..a77bef6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,6 +18,7 @@ platforms = ["linux-64"] [tool.pixi.dependencies] python = ">=3.10" +shellcheck = ">=0.10.0,<0.11" [tool.pixi.feature.py310.dependencies] python = "3.10.*" From 011eb99066dbc327f3cb3e5ab30d294e19f35165 Mon Sep 17 00:00:00 2001 From: Austin Gregg-Smith Date: Mon, 1 Sep 2025 09:52:37 +0000 Subject: [PATCH 02/21] bump pixi version --- .devcontainer/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile index 014e8cd..e57e4d7 100644 --- a/.devcontainer/Dockerfile +++ b/.devcontainer/Dockerfile @@ -1,6 +1,6 @@ FROM mcr.microsoft.com/devcontainers/base:jammy -ARG PIXI_VERSION=v0.41.4 +ARG PIXI_VERSION=v0.48.2 RUN curl -L -o /usr/local/bin/pixi -fsSL --compressed "https://github.com/prefix-dev/pixi/releases/download/${PIXI_VERSION}/pixi-$(uname -m)-unknown-linux-musl" \ && chmod +x /usr/local/bin/pixi \ From 468fc11282dc745d3f09f3ccd53e811a614b58f0 Mon Sep 17 00:00:00 2001 From: Austin Gregg-Smith Date: Mon, 1 Sep 2025 10:52:46 +0100 Subject: [PATCH 03/21] update pixi.lock --- pixi.lock | 868 +++++++++++++++++++++++++++--------------------------- 1 file changed, 438 insertions(+), 430 deletions(-) diff --git a/pixi.lock b/pixi.lock index 070f07a..c767ddd 100644 --- a/pixi.lock +++ b/pixi.lock @@ -10,52 +10,53 @@ environments: - 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pytest-env>=0.8.2 ; extra == 'test' - - pytest-freezer>=0.4.8 ; (python_full_version >= '3.13' and platform_python_implementation == 'CPython' and sys_platform == 'win32' and extra == 'test') or (platform_python_implementation == 'PyPy' and extra == 'test') + - pytest-freezer>=0.4.8 ; (python_full_version >= '3.13' and platform_python_implementation == 'CPython' and sys_platform == 'win32' and extra == 'test') or (platform_python_implementation == 'GraalVM' and extra == 'test') or (platform_python_implementation == 'PyPy' and extra == 'test') - pytest-mock>=3.11.1 ; extra == 'test' - pytest-randomly>=3.12 ; extra == 'test' - pytest-timeout>=2.1 ; extra == 'test' From 5032386d687c097a814408a79dfd7354ca63f1e0 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 27 Sep 2025 10:13:13 +0000 Subject: [PATCH 04/21] build(deps): bump prefix-dev/setup-pixi from 0.8.14 to 0.9.1 Bumps [prefix-dev/setup-pixi](https://github.com/prefix-dev/setup-pixi) from 0.8.14 to 0.9.1. - [Release notes](https://github.com/prefix-dev/setup-pixi/releases) - [Commits](https://github.com/prefix-dev/setup-pixi/compare/v0.8.14...v0.9.1) --- updated-dependencies: - dependency-name: prefix-dev/setup-pixi dependency-version: 0.9.1 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 3a9a57c..47e3a07 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -18,7 +18,7 @@ jobs: steps: - name: Checkout uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.8.14 + - uses: prefix-dev/setup-pixi@v0.9.1 with: cache: true frozen: true From aec6e44c5a1060172332c23e6547d341c7d07a3a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 27 Sep 2025 10:14:39 +0000 Subject: [PATCH 05/21] build(deps): bump the dev-dependencies group with 7 updates Updates the requirements on [pylint](https://github.com/pylint-dev/pylint), [pytest-cov](https://github.com/pytest-dev/pytest-cov), [pytest](https://github.com/pytest-dev/pytest), [hypothesis](https://github.com/HypothesisWorks/hypothesis), [ruff](https://github.com/astral-sh/ruff), [coverage](https://github.com/nedbat/coveragepy) and [pre-commit](https://github.com/pre-commit/pre-commit) to permit the latest version. Updates `pylint` to 3.3.8 - [Release notes](https://github.com/pylint-dev/pylint/releases) - [Commits](https://github.com/pylint-dev/pylint/compare/v3.2.5...v3.3.8) Updates `pytest-cov` to 7.0.0 - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-cov/compare/v4.1.0...v7.0.0) Updates `pytest` to 8.4.2 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/7.4.0...8.4.2) Updates `hypothesis` to 6.140.2 - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.104.2...hypothesis-python-6.140.2) Updates `ruff` to 0.13.2 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.5.0...0.13.2) Updates `coverage` to 7.10.7 - [Release notes](https://github.com/nedbat/coveragepy/releases) - [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst) - [Commits](https://github.com/nedbat/coveragepy/compare/7.5.4...7.10.7) Updates `pre-commit` to 4.3.0 - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](https://github.com/pre-commit/pre-commit/compare/v0.1.0...v4.3.0) --- updated-dependencies: - dependency-name: pylint dependency-version: 3.3.8 dependency-type: direct:production dependency-group: dev-dependencies - dependency-name: pytest-cov dependency-version: 7.0.0 dependency-type: direct:production dependency-group: dev-dependencies - dependency-name: pytest dependency-version: 8.4.2 dependency-type: direct:production dependency-group: dev-dependencies - dependency-name: hypothesis dependency-version: 6.140.2 dependency-type: direct:production dependency-group: dev-dependencies - dependency-name: ruff dependency-version: 0.13.2 dependency-type: direct:production dependency-group: dev-dependencies - dependency-name: coverage dependency-version: 7.10.7 dependency-type: direct:production dependency-group: dev-dependencies - dependency-name: pre-commit dependency-version: 4.3.0 dependency-type: direct:production dependency-group: dev-dependencies ... Signed-off-by: dependabot[bot] --- pyproject.toml | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index a77bef6..4eafda9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -35,13 +35,13 @@ python_template = { path = ".", editable = true } [project.optional-dependencies] test = [ - "pylint>=3.2.5,<=3.3.7", - "pytest-cov>=4.1,<=6.2.1", - "pytest>=7.4,<=8.4.1", - "hypothesis>=6.104.2,<=6.135.20", - "ruff>=0.5.0,<=0.12.1", - "coverage>=7.5.4,<=7.9.1", - "pre-commit<=4.2.0", + "pylint>=3.2.5,<=3.3.8", + "pytest-cov>=4.1,<=7.0.0", + "pytest>=7.4,<=8.4.2", + "hypothesis>=6.104.2,<=6.140.2", + "ruff>=0.5.0,<=0.13.2", + "coverage>=7.5.4,<=7.10.7", + "pre-commit<=4.3.0", ] [build-system] From ff660086f4c168c91273b1de2160004c6f2df396 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 27 Sep 2025 10:17:30 +0000 Subject: [PATCH 06/21] build(deps): bump actions/checkout from 4 to 5 Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 5. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v4...v5) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '5' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/ci.yml | 2 +- .github/workflows/pre-commit.yaml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 47e3a07..f769912 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -17,7 +17,7 @@ jobs: environment: [py310, py311, py312, py313] steps: - name: Checkout - uses: actions/checkout@v4 + uses: actions/checkout@v5 - uses: prefix-dev/setup-pixi@v0.9.1 with: cache: true diff --git a/.github/workflows/pre-commit.yaml b/.github/workflows/pre-commit.yaml index 8732461..6fbca1f 100644 --- a/.github/workflows/pre-commit.yaml +++ b/.github/workflows/pre-commit.yaml @@ -6,5 +6,5 @@ jobs: pre-commit: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v5 - uses: pre-commit/action@v3.0.1 From ab3a927089600472770fd4438bfbeda333263f99 Mon Sep 17 00:00:00 2001 From: Austin Gregg-Smith Date: Sat, 27 Sep 2025 10:25:03 +0000 Subject: [PATCH 07/21] only install extensions if inside a docker container --- .vscode/tasks.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.vscode/tasks.json b/.vscode/tasks.json index d0b6693..21823d1 100644 --- a/.vscode/tasks.json +++ b/.vscode/tasks.json @@ -140,7 +140,7 @@ "label": "Install All Recommended Extensions", "type": "shell", "linux": { - "command": "cat .vscode/extensions.json | jq .recommendations[] | xargs -n 1 code . --install-extension" + "command": "if [ -f /.dockerenv ] || grep -q 'docker\\|lxc' /proc/1/cgroup 2>/dev/null; then echo 'Docker container detected, installing extensions...'; cat .vscode/extensions.json | jq .recommendations[] | xargs -n 1 code . --install-extension; else echo 'Not in Docker container, skipping extension installation'; fi" }, "runOptions": { "runOn": "folderOpen" From 626c4c28bb801b110765297248dc4f415d4f68a5 Mon Sep 17 00:00:00 2001 From: Austin Gregg-Smith Date: Sun, 12 Oct 2025 12:08:54 +0100 Subject: [PATCH 08/21] remove deps.yaml and upate rockerc --- python_template.deps.yaml | 10 ---------- rockerc.yaml | 4 ++-- 2 files changed, 2 insertions(+), 12 deletions(-) delete mode 100644 python_template.deps.yaml diff --git a/python_template.deps.yaml b/python_template.deps.yaml deleted file mode 100644 index 63e6e6b..0000000 --- a/python_template.deps.yaml +++ /dev/null @@ -1,10 +0,0 @@ -apt_tools: - - git - - git-lfs - - python3-pip - - jq #for auto installing extensions in container - -pip_language-toolchain: - - uv #use uv instead of pip - - pip #update to the latest pip - - pre-commit diff --git a/rockerc.yaml b/rockerc.yaml index ed29457..6c0a6a3 100644 --- a/rockerc.yaml +++ b/rockerc.yaml @@ -5,9 +5,9 @@ # - image: Specifies the base image to pass to rocker # - args: Lists additional features or tools to be added to the docker image -image: ubuntu:22.04 +image: ubuntu:24.04 args: - - nvidia + - jquery - x11 - user - pull From 2435d1840f2dc8aefe536b8e0882eaf4de3ea832 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 1 Nov 2025 09:05:55 +0000 Subject: [PATCH 09/21] build(deps): bump prefix-dev/setup-pixi from 0.9.1 to 0.9.2 Bumps [prefix-dev/setup-pixi](https://github.com/prefix-dev/setup-pixi) from 0.9.1 to 0.9.2. - [Release notes](https://github.com/prefix-dev/setup-pixi/releases) - [Commits](https://github.com/prefix-dev/setup-pixi/compare/v0.9.1...v0.9.2) --- updated-dependencies: - dependency-name: prefix-dev/setup-pixi dependency-version: 0.9.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index f769912..f349db5 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -18,7 +18,7 @@ jobs: steps: - name: Checkout uses: actions/checkout@v5 - - uses: prefix-dev/setup-pixi@v0.9.1 + - uses: prefix-dev/setup-pixi@v0.9.2 with: cache: true frozen: true From f32d60d8714a7dcb30ba0590043f3a1b2e82543c Mon Sep 17 00:00:00 2001 From: Claude Date: Wed, 12 Nov 2025 11:10:28 +0000 Subject: [PATCH 10/21] Clean up README: remove black reference and update legacy section - Removed black from feature list (replaced with ruff for formatting) - Updated legacy section to remove outdated deps_rocker references - Clarified that ruff handles both formatting and linting --- README.md | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 514a5cc..24dd05d 100644 --- a/README.md +++ b/README.md @@ -4,8 +4,7 @@ A template repo for python projects that is set up using [pixi](https://pixi.sh) This has basic setup for * pylint -* ruff -* black +* ruff (formatting and linting) * pytest * git-lfs * basic github actions ci @@ -77,7 +76,7 @@ pixi run ci ## Legacy -If you don't want to install rocker on your system but want to use vscode, you can run the `scripts/launch_vscode.sh` script to build and connect to a docker container. It will install rocker in a venv. The docker container is dynamically generated using [rocker](https://github.com/osrf/rocker) and [deps rocker](https://github.com/blooop/deps_rocker). [deps rocker](https://github.com/blooop/deps_rocker) looks at the python_template.deps.yaml file to install any required apt, pip or shell scripts and launches a container that vscode attaches to. +If you don't want to install rocker on your system but want to use vscode, you can run the `scripts/launch_vscode.sh` script to build and connect to a docker container. It will install rocker in a venv. The docker container is dynamically generated using [rocker](https://github.com/osrf/rocker) and the configuration in `rockerc.yaml`. ## Troubleshooting From 0701fa303597504e35e4b30948a65b6691816744 Mon Sep 17 00:00:00 2001 From: Claude Date: Wed, 12 Nov 2025 11:11:40 +0000 Subject: [PATCH 11/21] Remove all black references and fix outdated configurations - Removed black from docs/intro.rst (replaced with ruff) - Updated .vscode/tasks.json autoformat task to use ruff and correct command - Removed black from .github/dependabot.yml dev-dependencies - Fixed scripts/rename_project.sh to remove non-existent deps.yaml reference --- .github/dependabot.yml | 5 ++--- .vscode/tasks.json | 4 ++-- docs/intro.rst | 3 +-- scripts/rename_project.sh | 1 - 4 files changed, 5 insertions(+), 8 deletions(-) diff --git a/.github/dependabot.yml b/.github/dependabot.yml index fee8002..676f0c3 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -12,13 +12,12 @@ updates: groups: dev-dependencies: #try to group all development dependencies updates into a single pr - patterns: - - "black" + patterns: - "check-manifest" - "pre-commit" - "pylint" - "pytest" - - "pytest-cov" + - "pytest-cov" - "hypothesis" - "ruff" - "coverage" diff --git a/.vscode/tasks.json b/.vscode/tasks.json index 21823d1..247130c 100644 --- a/.vscode/tasks.json +++ b/.vscode/tasks.json @@ -23,9 +23,9 @@ }, { "label": "autoformat", - "detail": "Use ruff and black to automatically fix and format the code", + "detail": "Use ruff to automatically fix and format the code", "type": "shell", - "command": "pixi run fmt" + "command": "pixi run format" }, { "label": "lint", diff --git a/docs/intro.rst b/docs/intro.rst index 6be63c5..55cfe53 100644 --- a/docs/intro.rst +++ b/docs/intro.rst @@ -6,8 +6,7 @@ A template repo for python projects This has basic setup for * pylint -* ruff -* black +* ruff (formatting and linting) * pytest * codecov * git-lfs diff --git a/scripts/rename_project.sh b/scripts/rename_project.sh index 394bbd6..a6343ce 100755 --- a/scripts/rename_project.sh +++ b/scripts/rename_project.sh @@ -1,7 +1,6 @@ #!/bin/bash mv python_template "$1" -mv python_template.deps.yaml "$1".deps.yaml # change project name in all files find . \( -type d -name .git -prune \) -o \( -type f -not -name 'tasks.json' -not -name 'update_from_template.sh' \) -print0 | xargs -0 sed -i "s/python_template/$1/g" From f28bb038925312908e2affebab399204946982cb Mon Sep 17 00:00:00 2001 From: Claude Date: Wed, 12 Nov 2025 11:13:01 +0000 Subject: [PATCH 12/21] Additional cleanup and consistency improvements - Updated docs/intro.rst Python version badge to show 3.10-3.13 - Fixed license badge in intro.rst to use correct URL - Removed outdated flit tasks from .vscode/tasks.json - Fixed pixi version mismatch in .devcontainer/devcontainer.json (v0.48.2) - Updated CHANGELOG.md version to match pyproject.toml (0.2.0) --- .devcontainer/devcontainer.json | 2 +- .vscode/tasks.json | 10 ---------- CHANGELOG.md | 2 +- docs/intro.rst | 4 ++-- 4 files changed, 4 insertions(+), 14 deletions(-) diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 0fdadf4..ac2d532 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -4,7 +4,7 @@ "dockerfile": "Dockerfile", "context": "..", "args": { - "PIXI_VERSION": "v0.41.4" + "PIXI_VERSION": "v0.48.2" } }, "customizations": { diff --git a/.vscode/tasks.json b/.vscode/tasks.json index 247130c..61f349d 100644 --- a/.vscode/tasks.json +++ b/.vscode/tasks.json @@ -103,17 +103,7 @@ "detail": "Replaces all instances of the template project name with a new name. ", "type": "shell", "command": "scripts/rename_project.sh '${input:new_project_name}' '${input:new_author_name}' '${input:new_author_email}' '${input:github_username}'" - }, - { - "label": "flit install", - "type": "shell", - "command": "flit install --symlink" }, - { - "label": "flit publish", - "type": "shell", - "command": "flit publish" - }, { "label": "setup: host", "detail": "Sets up docker, nvidia docker git-lfs and rocker which are used to clone and setup docker containers", diff --git a/CHANGELOG.md b/CHANGELOG.md index 99f9c7a..1eea5d9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,4 +2,4 @@ ## python_template -## [0.0.0] +## [0.2.0] diff --git a/docs/intro.rst b/docs/intro.rst index 55cfe53..3ce0feb 100644 --- a/docs/intro.rst +++ b/docs/intro.rst @@ -21,8 +21,8 @@ This has basic setup for [![GitHub issues](https://img.shields.io/github/issues/blooop/python_template.svg)](https://GitHub.com/blooop/python_template/issues/) [![GitHub pull-requests merged](https://badgen.net/github/merged-prs/blooop/python_template)](https://github.com/blooop/python_template/pulls?q=is%3Amerged) [![GitHub release](https://img.shields.io/github/release/blooop/python_template.svg)](https://GitHub.com/blooop/python_template/releases/) -[![License](https://img.shields.io/pypi/l/bencher)](https://opensource.org/license/mit/) -[![Python](https://img.shields.io/badge/python-3.10%20%7C%203.11-blue)](https://www.python.org/downloads/release/python-310/) +[![License](https://img.shields.io/github/license/blooop/python_template)](https://opensource.org/license/mit/) +[![Python](https://img.shields.io/badge/python-3.10%20%7C%203.11%20%7C%203.12%20%7C%203.13-blue)](https://www.python.org/downloads/) To set up your project run the vscode task "pull updates from template repo" and then task "rename project template name" From 562f04616754ed75e217d86c39f0db6f3b876280 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 12 Nov 2025 11:37:21 +0000 Subject: [PATCH 13/21] build(deps): bump prefix-dev/setup-pixi from 0.9.2 to 0.9.3 Bumps [prefix-dev/setup-pixi](https://github.com/prefix-dev/setup-pixi) from 0.9.2 to 0.9.3. - [Release notes](https://github.com/prefix-dev/setup-pixi/releases) - [Commits](https://github.com/prefix-dev/setup-pixi/compare/v0.9.2...v0.9.3) --- updated-dependencies: - dependency-name: prefix-dev/setup-pixi dependency-version: 0.9.3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index f349db5..d14f7a9 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -18,7 +18,7 @@ jobs: steps: - name: Checkout uses: actions/checkout@v5 - - uses: prefix-dev/setup-pixi@v0.9.2 + - uses: prefix-dev/setup-pixi@v0.9.3 with: cache: true frozen: true From 5990b4339252a52aa980ac848a94be51602db13a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 12 Nov 2025 11:38:27 +0000 Subject: [PATCH 14/21] build(deps-dev): bump the dev-dependencies group across 1 directory with 6 updates Updates the requirements on [pylint](https://github.com/pylint-dev/pylint), [pytest](https://github.com/pytest-dev/pytest), [hypothesis](https://github.com/HypothesisWorks/hypothesis), [ruff](https://github.com/astral-sh/ruff), [coverage](https://github.com/coveragepy/coveragepy) and [pre-commit](https://github.com/pre-commit/pre-commit) to permit the latest version. Updates `pylint` to 4.0.2 - [Release notes](https://github.com/pylint-dev/pylint/releases) - [Commits](https://github.com/pylint-dev/pylint/compare/v3.2.5...v4.0.2) Updates `pytest` to 9.0.0 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/7.4.0...9.0.0) Updates `hypothesis` to 6.147.0 - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.104.2...hypothesis-python-6.147.0) Updates `ruff` to 0.14.4 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.5.0...0.14.4) Updates `coverage` to 7.11.3 - [Release notes](https://github.com/coveragepy/coveragepy/releases) - [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst) - [Commits](https://github.com/coveragepy/coveragepy/compare/7.5.4...7.11.3) Updates `pre-commit` to 4.4.0 - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](https://github.com/pre-commit/pre-commit/compare/v0.1.0...v4.4.0) --- updated-dependencies: - dependency-name: pylint dependency-version: 4.0.2 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: pytest dependency-version: 9.0.0 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: hypothesis dependency-version: 6.147.0 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: ruff dependency-version: 0.14.4 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: coverage dependency-version: 7.11.3 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: pre-commit dependency-version: 4.4.0 dependency-type: direct:development dependency-group: dev-dependencies ... Signed-off-by: dependabot[bot] --- pyproject.toml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 4eafda9..929f7ac 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -35,13 +35,13 @@ python_template = { path = ".", editable = true } [project.optional-dependencies] test = [ - "pylint>=3.2.5,<=3.3.8", + "pylint>=3.2.5,<=4.0.2", "pytest-cov>=4.1,<=7.0.0", - "pytest>=7.4,<=8.4.2", - "hypothesis>=6.104.2,<=6.140.2", - "ruff>=0.5.0,<=0.13.2", - "coverage>=7.5.4,<=7.10.7", - "pre-commit<=4.3.0", + "pytest>=7.4,<=9.0.0", + "hypothesis>=6.104.2,<=6.147.0", + "ruff>=0.5.0,<=0.14.4", + "coverage>=7.5.4,<=7.11.3", + "pre-commit<=4.4.0", ] [build-system] From 09d0db864758a2e1e37ef0dd1d16b494fe3d606b Mon Sep 17 00:00:00 2001 From: Austin Gregg-Smith Date: Sat, 15 Nov 2025 09:35:21 +0000 Subject: [PATCH 15/21] update pixi to workspace --- pixi.lock | 16 ++++++++-------- pyproject.toml | 2 +- 2 files changed, 9 insertions(+), 9 deletions(-) diff --git a/pixi.lock b/pixi.lock index c767ddd..a8db904 100644 --- a/pixi.lock +++ b/pixi.lock @@ -898,15 +898,15 @@ packages: - 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__glibc >=2.17,<3.0.a0 + - libgcc >=13 + - libstdcxx >=13 + - libzlib >=1.3.1,<2.0a0 + license: BSD-3-Clause + license_family: BSD + purls: [] + size: 567578 + timestamp: 1742433379869 From 46b2e99f181979c30b787cc0cf363fed6bda8e60 Mon Sep 17 00:00:00 2001 From: Claude Date: Sun, 16 Nov 2025 14:19:55 +0000 Subject: [PATCH 17/21] Add Claude Code online environment support This commit adds complete support for Claude Code online environment: - Add .claude/hooks/SessionStart: Automatically sets up pixi and dependencies - Add .claude/README.md: Comprehensive documentation for Claude Code usage - Add .claude/activate.sh: Manual environment activation script - Update README.md: Add Claude Code section with quick start guide The SessionStart hook automatically: - Installs pixi package manager if not present - Installs all project dependencies via pixi - Sets up pre-commit hooks - Configures git merge drivers This enables immediate development in Claude Code online without manual setup. --- .claude/README.md | 63 ++++++++++++++++++++++++++++++++++++++ .claude/activate.sh | 19 ++++++++++++ .claude/hooks/SessionStart | 50 ++++++++++++++++++++++++++++++ README.md | 21 +++++++++++++ 4 files changed, 153 insertions(+) create mode 100644 .claude/README.md create mode 100755 .claude/activate.sh create mode 100755 .claude/hooks/SessionStart diff --git a/.claude/README.md b/.claude/README.md new file mode 100644 index 0000000..0b0cc31 --- /dev/null +++ b/.claude/README.md @@ -0,0 +1,63 @@ +# Claude Code Configuration + +This directory contains configuration for using this project with Claude Code, particularly in the online environment. + +## SessionStart Hook + +The `hooks/SessionStart` script automatically runs when a new Claude Code session begins. It: + +1. **Installs pixi** (if not already installed) - The package and environment manager +2. **Installs project dependencies** - All Python packages and tools defined in `pyproject.toml` +3. **Sets up pre-commit hooks** - For automatic code quality checks +4. **Configures git** - Sets up merge drivers for lockfiles + +## Usage with Claude Code Online + +When you start a Claude Code online session, the SessionStart hook will automatically run and set up your environment. You'll see output indicating the setup progress. + +### Available Commands + +Once setup is complete, Claude can use these pixi tasks: + +#### Testing & Quality +- `pixi run test` - Run pytest tests +- `pixi run coverage` - Run tests with coverage report +- `pixi run lint` - Run ruff and pylint linters +- `pixi run format` - Format code with ruff + +#### CI Tasks +- `pixi run ci` - Run full CI pipeline (format, lint, test, coverage) +- `pixi run fix` - Auto-fix common issues (update lock, format, lint) + +#### Pre-commit +- `pixi run pre-commit` - Run all pre-commit hooks +- `pixi run pre-commit-update` - Update pre-commit hook versions + +### How It Works + +1. **First session**: The hook installs pixi and all dependencies (may take a few minutes) +2. **Subsequent sessions**: The hook verifies the environment is ready (much faster) +3. **Environment activated**: All pixi commands are available to Claude + +### Troubleshooting + +If you encounter issues: + +1. **Dependencies not found**: Run `pixi install` manually +2. **Lockfile conflicts**: Run `pixi run update-lock` +3. **Pre-commit issues**: Run `pixi run pre-commit-update` +4. **Full reset**: Delete `.pixi` directory and restart session + +### Customization + +You can modify `hooks/SessionStart` to: +- Install additional tools +- Run custom setup scripts +- Configure environment variables +- Set up external services + +## Learn More + +- [Claude Code Documentation](https://docs.claude.com/claude-code) +- [Pixi Documentation](https://pixi.sh) +- [Project README](../README.md) diff --git a/.claude/activate.sh b/.claude/activate.sh new file mode 100755 index 0000000..c6ca221 --- /dev/null +++ b/.claude/activate.sh @@ -0,0 +1,19 @@ +#!/bin/bash +# Source this file to activate the pixi environment in your current shell +# Usage: source .claude/activate.sh + +# Add pixi to PATH +export PATH="$HOME/.pixi/bin:$PATH" + +# Optional: Activate pixi shell if available +if command -v pixi &> /dev/null; then + echo "✅ Pixi environment activated" + echo "💡 Available commands:" + echo " pixi run test - Run tests" + echo " pixi run lint - Run linters" + echo " pixi run format - Format code" + echo " pixi run ci - Run full CI" + pixi task list --summary 2>/dev/null || true +else + echo "⚠️ Pixi not found. Please run .claude/hooks/SessionStart first." +fi diff --git a/.claude/hooks/SessionStart b/.claude/hooks/SessionStart new file mode 100755 index 0000000..14958b5 --- /dev/null +++ b/.claude/hooks/SessionStart @@ -0,0 +1,50 @@ +#!/bin/bash +# SessionStart hook for Claude Code online environment +# This script sets up the Python development environment using pixi + +set -e + +echo "🚀 Setting up Python Template environment..." + +# Check if pixi is installed +if ! command -v pixi &> /dev/null; then + echo "📦 Installing pixi..." + curl -fsSL https://pixi.sh/install.sh | bash + + # Add pixi to PATH for current session + export PATH="$HOME/.pixi/bin:$PATH" + + # Source bashrc to get pixi in PATH (if bashrc was updated) + [ -f "$HOME/.bashrc" ] && source "$HOME/.bashrc" + + echo "✅ Pixi installed successfully" +else + echo "✅ Pixi already installed" +fi + +# Ensure pixi is in PATH for this session +export PATH="$HOME/.pixi/bin:$PATH" + +# Install project dependencies +echo "📦 Installing project dependencies..." +pixi install + +# Run pre-commit installation +echo "🔧 Setting up pre-commit hooks..." +pixi run pre-commit install || echo "⚠️ Pre-commit installation skipped (optional)" + +# Set up git merge driver for lockfiles +echo "🔧 Configuring git merge driver..." +pixi run setup-git-merge-driver || true + +echo "✅ Environment setup complete!" +echo "" +echo "Available pixi tasks:" +pixi task list +echo "" +echo "💡 Common commands:" +echo " pixi run test - Run tests" +echo " pixi run lint - Run linters" +echo " pixi run format - Format code" +echo " pixi run ci - Run full CI pipeline" +echo "" diff --git a/README.md b/README.md index 24dd05d..8e9aa8a 100644 --- a/README.md +++ b/README.md @@ -36,6 +36,27 @@ If you want to use docker you may want to run the `scripts/setup_host.sh` script If you are using pixi, look at the available tasks in pyproject.toml If you are new to pixi follow the instructions on the pixi [website](https://prefix.dev/) +# Claude Code Online Support + +This template includes built-in support for [Claude Code](https://docs.claude.com/claude-code) online environment! The `.claude/hooks/SessionStart` script automatically: + +- Installs pixi package manager +- Sets up all project dependencies +- Configures pre-commit hooks +- Prepares the development environment + +**Quick Start with Claude Code:** +1. Open this repository in Claude Code online +2. The environment sets up automatically via the SessionStart hook +3. Claude can immediately run commands like `pixi run test`, `pixi run lint`, etc. + +**Manual activation (if needed):** +```bash +source .claude/activate.sh +``` + +See [.claude/README.md](.claude/README.md) for detailed information about the Claude Code configuration. + # Github setup There are github workflows for CI, codecov and automated pypi publishing in `ci.yml` and `publish.yml`. From d260b40d073ff46658224ed52139a949f96cea1a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 29 Nov 2025 09:32:03 +0000 Subject: [PATCH 18/21] build(deps): bump actions/checkout from 5 to 6 Bumps [actions/checkout](https://github.com/actions/checkout) from 5 to 6. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v5...v6) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/ci.yml | 2 +- .github/workflows/pre-commit.yaml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index d14f7a9..1faece7 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -17,7 +17,7 @@ jobs: environment: [py310, py311, py312, py313] steps: - name: Checkout - uses: actions/checkout@v5 + uses: actions/checkout@v6 - uses: prefix-dev/setup-pixi@v0.9.3 with: cache: true diff --git a/.github/workflows/pre-commit.yaml b/.github/workflows/pre-commit.yaml index 6fbca1f..85c58eb 100644 --- a/.github/workflows/pre-commit.yaml +++ b/.github/workflows/pre-commit.yaml @@ -6,5 +6,5 @@ jobs: pre-commit: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - uses: pre-commit/action@v3.0.1 From 4a40b2aab4ae50ad31cb9a599ed31315a0688de5 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 29 Nov 2025 09:33:11 +0000 Subject: [PATCH 19/21] build(deps-dev): bump the dev-dependencies group with 6 updates Updates the requirements on [pylint](https://github.com/pylint-dev/pylint), [pytest](https://github.com/pytest-dev/pytest), [hypothesis](https://github.com/HypothesisWorks/hypothesis), [ruff](https://github.com/astral-sh/ruff), [coverage](https://github.com/coveragepy/coveragepy) and [pre-commit](https://github.com/pre-commit/pre-commit) to permit the latest version. Updates `pylint` to 4.0.3 - [Release notes](https://github.com/pylint-dev/pylint/releases) - [Commits](https://github.com/pylint-dev/pylint/compare/v3.2.5...v4.0.3) Updates `pytest` to 9.0.1 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/7.4.0...9.0.1) Updates `hypothesis` to 6.148.3 - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.104.2...hypothesis-python-6.148.3) Updates `ruff` to 0.14.7 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.5.0...0.14.7) Updates `coverage` to 7.12.0 - [Release notes](https://github.com/coveragepy/coveragepy/releases) - [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst) - [Commits](https://github.com/coveragepy/coveragepy/compare/7.5.4...7.12.0) Updates `pre-commit` to 4.5.0 - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](https://github.com/pre-commit/pre-commit/compare/v0.1.0...v4.5.0) --- updated-dependencies: - dependency-name: pylint dependency-version: 4.0.3 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: pytest dependency-version: 9.0.1 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: hypothesis dependency-version: 6.148.3 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: ruff dependency-version: 0.14.7 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: coverage dependency-version: 7.12.0 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: pre-commit dependency-version: 4.5.0 dependency-type: direct:development dependency-group: dev-dependencies ... Signed-off-by: dependabot[bot] --- pyproject.toml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index fe88a6c..bdaf7ef 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -35,13 +35,13 @@ python_template = { path = ".", editable = true } [project.optional-dependencies] test = [ - "pylint>=3.2.5,<=4.0.2", + "pylint>=3.2.5,<=4.0.3", "pytest-cov>=4.1,<=7.0.0", - "pytest>=7.4,<=9.0.0", - "hypothesis>=6.104.2,<=6.147.0", - "ruff>=0.5.0,<=0.14.4", - "coverage>=7.5.4,<=7.11.3", - "pre-commit<=4.4.0", + "pytest>=7.4,<=9.0.1", + "hypothesis>=6.104.2,<=6.148.3", + "ruff>=0.5.0,<=0.14.7", + "coverage>=7.5.4,<=7.12.0", + "pre-commit<=4.5.0", ] [build-system] From 48cece37cbbfe4afda6979b79214772fbf238875 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Dec 2025 10:50:10 +0000 Subject: [PATCH 20/21] build(deps-dev): bump the dev-dependencies group with 2 updates Updates the requirements on [pylint](https://github.com/pylint-dev/pylint) and [hypothesis](https://github.com/HypothesisWorks/hypothesis) to permit the latest version. Updates `pylint` to 4.0.4 - [Release notes](https://github.com/pylint-dev/pylint/releases) - [Commits](https://github.com/pylint-dev/pylint/compare/v3.2.5...v4.0.4) Updates `hypothesis` to 6.148.5 - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.104.2...hypothesis-python-6.148.5) --- updated-dependencies: - dependency-name: pylint dependency-version: 4.0.4 dependency-type: direct:development dependency-group: dev-dependencies - dependency-name: hypothesis dependency-version: 6.148.5 dependency-type: direct:development dependency-group: dev-dependencies ... Signed-off-by: dependabot[bot] --- pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index bdaf7ef..c244a8d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -35,10 +35,10 @@ python_template = { path = ".", editable = true } [project.optional-dependencies] test = [ - "pylint>=3.2.5,<=4.0.3", + "pylint>=3.2.5,<=4.0.4", "pytest-cov>=4.1,<=7.0.0", "pytest>=7.4,<=9.0.1", - "hypothesis>=6.104.2,<=6.148.3", + "hypothesis>=6.104.2,<=6.148.5", "ruff>=0.5.0,<=0.14.7", "coverage>=7.5.4,<=7.12.0", "pre-commit<=4.5.0", From d53187f65c58c260e2b4509a0d036db0282d17de Mon Sep 17 00:00:00 2001 From: Austin Gregg-Smith Date: Mon, 22 Dec 2025 14:16:38 +0000 Subject: [PATCH 21/21] update pixi.lock --- pixi.lock | 553 ++++++++++++++++++++++++++---------------------------- 1 file changed, 271 insertions(+), 282 deletions(-) diff --git a/pixi.lock b/pixi.lock index 0932b75..a795d39 100644 --- a/pixi.lock +++ b/pixi.lock @@ -5,57 +5,57 @@ environments: - 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