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set unstable
set script-interpreter := ["bash", "-euo", "pipefail" ]
export GITHUB_ROOT := clean(source_directory())
[default]
_default:
@just --list --unsorted
[script]
build-images:
cd "${GITHUB_ROOT}"
. config/dev.local.env
docker compose build
[script]
start:
cd "${GITHUB_ROOT}"
. config/dev.local.env
. config/secrets.dev.local.env
docker compose up -d
[script]
stop:
cd "${GITHUB_ROOT}"
. config/dev.local.env
docker compose down
[script]
line-endings:
cd "${GITHUB_ROOT}"
find . -type f -name "*.sh" -exec dos2unix {} +
[script]
importer-up:
cd "${GITHUB_ROOT}"
. config/dev.local.env
. config/secrets.dev.local.env
docker compose up -d db importer
# Creates db with tables; does not import data
[script]
create-gmt-db:
cd "${GITHUB_ROOT}"
. config/dev.local.env
. config/secrets.dev.local.env
DB_EXISTS=false
if docker compose exec -T db psql \
-U postgres \
-d postgres \
-tc "SELECT 1 FROM pg_database WHERE datname = '${DB_NAME}'" \
| grep -q 1; then
DB_EXISTS=true
fi
echo "$DB_EXISTS"
if $DB_EXISTS; then
echo "${DB_NAME} db already exists"
# exit 0
docker compose exec db psql -U postgres -d postgres -c "
SELECT pg_terminate_backend(pid)
FROM pg_stat_activity
WHERE datname = '${DB_NAME}';
"
docker compose exec db dropdb \
-U postgres \
"${DB_NAME}"
fi
echo "Creating database ${DB_NAME}"
docker compose exec db createdb \
-U postgres \
"${DB_NAME}"
docker compose exec db \
psql -U postgres -d "${DB_NAME}" \
-c "CREATE EXTENSION IF NOT EXISTS postgis;"
docker compose -f docker-compose.local.yml \
-f docker-compose.db-manager.local.yml \
-f docker-compose.db.yml run --rm db-manager
# We also need the settlements_latest view
# docker compose exec -T db \
# psql -U postgres -d "${DB_NAME}" \
# < "${GITHUB_ROOT}/db-manager/scripts/sql/migrations/000006.000008_settlement.polygon_view.sql"
# docker compose exec -T db \
# psql -U postgres -d "${DB_NAME}" \
# < "${GITHUB_ROOT}/db-manager/scripts/sql/migrations/000011.000003_settlement.part.sql"
# Used for testing dev setup with a subset of NGA data
[script]
create-fgdb:
cd "${GITHUB_ROOT}"
FULL_GDB_PATH="${GITHUB_ROOT}/importer/data/full/GEOPODE_GEOMETRY_EXPORT.gdb"
GDB_PATH="${GITHUB_ROOT}/importer/data/GEOPODE_GEOMETRY_EXPORT.gdb"
rm -rf "${GDB_PATH}"
docker run --rm \
--user "$(id -u):$(id -g)" \
--mount type=bind,source="$(pwd)",target="$(pwd)" \
--entrypoint gdal \
ghcr.io/osgeo/gdal:ubuntu-full-3.13.0 \
vector pipeline \
! read --input "${FULL_GDB_PATH}" --input-layer boundary_country_health_boundaries \
! set-geom-type --geometry-type MULTIPOLYGON \
! write --output "${GDB_PATH}" \
--output-format OpenFileGDB \
--overwrite
ogrinfo "${GDB_PATH}" -so
layers=(
boundary_lgas_health_boundaries
boundary_states_health_boundaries
boundary_wards_health_boundaries
poi_church_health_boundaries
poi_church_health_boundaries_osm
poi_commercial_health_boundaries_osm
poi_general_health_boundaries_osm
poi_health_facilities_health_boundaries
poi_infrastructure_health_boundaries_osm
poi_market_health_boundaries_osm
poi_mosque_health_boundaries
poi_mosque_health_boundaries_osm
poi_natural_health_boundaries_osm
poi_school_health_boundaries
poi_school_health_boundaries_osm
poi_security_health_boundaries_osm
poi_transport_health_boundaries_osm
poi_water_health_boundaries_osm
settlement_bua_health_boundaries
settlement_ha_health_boundaries
settlement_name_not_primary_health_boundaries
settlement_name_primary_health_boundaries
settlement_name_real_health_boundaries
settlement_pos_health_boundaries
settlement_ssa_health_boundaries
soi_roads_major_health_boundaries
soi_roads_residential_health_boundaries
soi_roads_tertiary_health_boundaries
soi_roads_track_health_boundaries
)
for layer in "${layers[@]}"; do
echo "Processing: $layer"
docker run --rm \
--user "$(id -u):$(id -g)" \
--mount type=bind,source="$(pwd)",target="$(pwd)" \
--entrypoint gdal \
ghcr.io/osgeo/gdal:ubuntu-full-3.13.0 \
vector pipeline \
! read --input "${FULL_GDB_PATH}" --input-layer "${layer}" \
! filter --where "states_code IN ('BR', 'KN')" \
! write --output "${GDB_PATH}" \
--output-format OpenFileGDB \
--update \
--output-layer "${layer}"
done
ogrinfo "${GDB_PATH}" \
boundary_states_health_boundaries -geom=no
[script]
names:
settlement_name_primary_health_boundaries
[script]
import-geopode-data: importer-up create-gmt-db
cd "${GITHUB_ROOT}"
. config/dev.local.env
GDB_PATH="${GITHUB_ROOT}/importer/data/GEOPODE_GEOMETRY_EXPORT.gdb"
if [ ! -d "$GDB_PATH" ]; then
echo "Expected Geopode NGA FileGDB to exist: $GDB_PATH"
exit 1
fi
RASTER_PATH="${GITHUB_ROOT}/importer/data/rasters/input/pop_4326.tif"
if [ ! -f "$RASTER_PATH" ]; then
echo "Expected worldpop raster to exist: $RASTER_PATH"
exit 1
fi
IMPORT_SH_PATH="${GITHUB_ROOT}/importer/data/import.sh"
rm -f "${IMPORT_SH_PATH}"
docker compose exec importer \
/scripts/prepare_import_views.sh
docker compose exec importer \
/scripts/import_all_data.sh
echo "Removing import views"
docker compose exec importer \
/scripts/remove_import_views.sh
echo "Assign set. part to names"
# to assign geospially the primary name
docker compose exec db psql \
--echo-all -v ON_ERROR_STOP=1 \
--dbname "${DB_NAME}" \
-U "${DB_USER}" -c "
WITH sp_global_ids AS (
SELECT
p.global_id AS part_global_id,
(ARRAY_AGG(DISTINCT n.global_id))[1] AS n_global_id
FROM settlement.part p
INNER JOIN settlement.name n
ON ST_Intersects(p.geom, n.geom)
WHERE n.settlement_part IS NULL
GROUP BY p.global_id
HAVING COUNT(DISTINCT n.global_id) = 1
)
UPDATE settlement.name n_update
SET settlement_part = pn.part_global_id
FROM sp_global_ids pn
WHERE pn.n_global_id = n_update.global_id
"
docker compose exec importer \
/scripts/create_simplified.sh
docker compose exec importer \
/usr/gmt-venv/bin/python \
/src/gdm/partitions/main.py \
--config /config_files/docker_local_db.yml 1 8 --clean
docker compose exec db psql \
--echo-all -v ON_ERROR_STOP=1 \
--dbname "${DB_NAME}" \
-U "${DB_USER}" -c "
TRUNCATE TABLE boundary.polygon_edited;
INSERT INTO boundary.polygon_edited (global_id, version_id, is_deleted, boundary_polygon,
geom, name, code, properties, bbox)
SELECT global_id, version_id, is_deleted,
global_id as boundary_polygon,
geom, name, code, properties, bbox FROM boundary.polygon WHERE level=3;
REFRESH MATERIALIZED VIEW boundary.polygon_edited_latest;
"
[script]
create-keycloak-db:
cd "${GITHUB_ROOT}"
. config/dev.local.env
. config/secrets.dev.local.env
DB_NAME=keycloak
DB_EXISTS=false
if docker compose exec -T db psql \
-U postgres \
-d postgres \
-tc "SELECT 1 FROM pg_database WHERE datname = '${DB_NAME}'" \
| grep -q 1; then
DB_EXISTS=true
fi
echo "$DB_EXISTS"
if $DB_EXISTS; then
echo "${DB_NAME} db already exists"
# exit 0
docker compose exec db psql -U postgres -d postgres -c "
SELECT pg_terminate_backend(pid)
FROM pg_stat_activity
WHERE datname = '${DB_NAME}';
"
docker compose exec db dropdb \
-U postgres \
"${DB_NAME}"
fi
echo "Creating database ${DB_NAME}"
docker compose exec db createdb \
-U postgres \
"${DB_NAME}"
[script]
rebuild-keycloak-image: create-keycloak-db
docker stop gmt_keycloak || true
docker rm gmt_keycloak || true
docker-compose build --no-cache keycloak
#Start keycloak container. This will create 5 users with credentials stored in these env variables:
. ./config/dev.local.env
. ./config/secrets.dev.local.env
docker compose up -d keycloak
[script]
build-help:
cd "${GITHUB_ROOT}"
set -x
export SPHINX_ROOT_PATH="${GITHUB_ROOT}/sphinx"
export SPHINX_SOURCE_PATH="${GITHUB_ROOT}/sphinx/UserGuide"
export SPHINX_OUTPUT_PATH="${GITHUB_ROOT}/sphinx/UserGuide/_build"
container_name='gmt_sphinx_run'
cleanup_sphinx_container() {
if docker ps -a --format '{{{{.Names}}' | grep -qx "$container_name"; then
echo "Removing container"
docker rm -f "$container_name"
else
echo "container did not exist"
fi
}
echo "build-help: Building from sources in ${SPHINX_SOURCE_PATH}"
cleanup_sphinx_container;
docker compose -f docker-compose.sphinx.yml build sphinx
docker-compose -f docker-compose.sphinx.yml run --name ${container_name} sphinx /usr/bin/make html
docker cp ${container_name}:/docs/_build/html ${SPHINX_OUTPUT_PATH}
echo "The Help was successfully built and copied to ${SPHINX_OUTPUT_PATH}"
cleanup_sphinx_container;