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refactor: move structure_utils out of eval #355

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@DorisMai

eval/structure_utils.py now hosts core sampling-input logic (e.g. SampleworksProcessedStructure, process_structure_to_trajectory_input) used by the scalers, so its eval/ location is misleading.

Probably should move it to src/sampleworks/utils/, and move tests/eval/test_structure_utils.py to tests/utils/test_structure_utils.py? This would also require updating the import lines in other files that use them.

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