diff --git a/TOGA2/annotations.tsv b/TOGA2/annotations.tsv
new file mode 100644
index 0000000..ec68fd9
--- /dev/null
+++ b/TOGA2/annotations.tsv
@@ -0,0 +1,907 @@
+assembly_accession	access_url
+GCA_000688575.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Cavia_aperea__Brazilian_guinea_pig__cavApe1__GCA_000688575.1/query_annotation.gff.gz
+GCA_000765075.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Capra_aegagrus__wild_goat__HLcapAeg1__GCA_000765075.1/query_annotation.gff.gz
+GCA_000767525.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Vicugna_pacos_huacaya__alpaca__HLvicPacHua3__GCA_000767525.1/query_annotation.gff.gz
+GCA_000767855.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Camelus_bactrianus__Bactrian_camel__HLcamBac1__GCA_000767855.1/query_annotation.gff.gz
+GCA_000772465.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Nasalis_larvatus__proboscis_monkey__nasLar1__GCA_000772465.1/query_annotation.gff.gz
+GCA_000803125.3	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Camelus_dromedarius__Arabian_camel__HLcamDro2__GCA_000803125.3/query_annotation.gff.gz
+GCA_000978805.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Balaenoptera_bonaerensis__Antarctic_minke_whale__HLbalBon1__GCA_000978805.1/query_annotation.gff.gz
+GCA_001262655.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Eulemur_macaco__black_lemur__eulMac1__GCA_001262655.1/query_annotation.gff.gz
+GCA_001458135.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Marmota_marmota_marmota__Alpine_marmot__HLmarMar1__GCA_001458135.1/query_annotation.gff.gz
+GCA_001595765.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Miniopterus_natalensis__Natal_long-fingered_bat__HLminNat1__GCA_001595765.1/query_annotation.gff.gz
+GCA_001651235.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Giraffa_tippelskirchi__Masai_giraffe__HLgirTip1__GCA_001651235.1/query_annotation.gff.gz
+GCA_001675575.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Neotoma_lepida__desert_woodrat__HLneoLep1__GCA_001675575.1/query_annotation.gff.gz
+GCA_001685075.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Bramus_lutescens__Transcaucasian_mole_vole__HLellLut1__GCA_001685075.1/query_annotation.gff.gz
+GCA_001685095.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Ellobius_talpinus__Northern_mole_vole__HLellTal1__GCA_001685095.1/query_annotation.gff.gz
+GCA_001704415.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Capra_hircus__goat__HLcapHir2__GCA_001704415.1/query_annotation.gff.gz
+GCA_001888835.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Rhinolophus_sinicus__Chinese_rufous_horseshoe_bat__HLrhiSin1__GCA_001888835.1/query_annotation.gff.gz
+GCA_001890085.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Hipposideros_armiger__great_roundleaf_bat__HLhipArm1__GCA_001890085.1/query_annotation.gff.gz
+GCA_001984765.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Castor_canadensis__American_beaver__HLcasCana5__GCA_001984765.2/query_annotation.gff.gz
+GCA_002007445.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Ailuropoda_melanoleuca__giant_panda__HLailMel2__GCA_002007445.2/query_annotation.gff.gz
+GCA_002197005.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Cervus_elaphus_hippelaphus__Red_deer__HLcerElapHip3__GCA_002197005.1/query_annotation.gff.gz
+GCA_002201775.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Ammotragus_lervia__aoudad__HLammLer1__GCA_002201775.1/query_annotation.gff.gz
+GCA_002215935.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Psammomys_obesus__fat_sand_rat__HLpsaObe1__GCA_002215935.2/query_annotation.gff.gz
+GCA_002288925.3	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Delphinapterus_leucas__beluga_whale__HLdelLeu2__GCA_002288925.3/query_annotation.gff.gz
+GCA_002406435.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Spermophilus_dauricus__Daurian_ground_squirrel__HLspeDau1__GCA_002406435.1/query_annotation.gff.gz
+GCA_002443075.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Elaphurus_davidianus__Pere_Davids_deer__HLelaDav1__GCA_002443075.1/query_annotation.gff.gz
+GCA_002776525.3	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Piliocolobus_tephrosceles__Ugandan_red_Colobus__HLpilTep2__GCA_002776525.3/query_annotation.gff.gz
+GCA_002837175.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Physeter_macrocephalus__sperm_whale__HLphyCat2__GCA_002837175.2/query_annotation.gff.gz
+GCA_002844835.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Dicerorhinus_sumatrensis_sumatrensis__Sumatran_rhinoceros__HLdicSum1__GCA_002844835.1/query_annotation.gff.gz
+GCA_002933975.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Bos_indicus__zebu_cattle__HLbosInd2__GCA_002933975.1/query_annotation.gff.gz
+GCA_003009895.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Hyaena_hyaena__striped_hyena__HLhyaHya1__GCA_003009895.1/query_annotation.gff.gz
+GCA_003033725.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Equus_asinus_asinus__ass__HLequAsiAsi2__GCA_003033725.1/query_annotation.gff.gz
+GCA_003121395.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Bubalus_bubalis__water_buffalo__HLbubBub2__GCA_003121395.1/query_annotation.gff.gz
+GCA_003121645.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Ovis_ammon__argali__HLoviAmm1__GCA_003121645.1/query_annotation.gff.gz
+GCA_003182575.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Pseudois_nayaur__Bharal__HLpseNaya1__GCA_003182575.1/query_annotation.gff.gz
+GCA_003182615.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Capra_sibirica__Siberian_ibex__HLcapSib1__GCA_003182615.2/query_annotation.gff.gz
+GCA_003255815.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Theropithecus_gelada__gelada__HLtheGel1__GCA_003255815.1/query_annotation.gff.gz
+GCA_003258685.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Prolemur_simus__greater_bamboo_lemur__HLproSim1__GCA_003258685.1/query_annotation.gff.gz
+GCA_003265705.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Callorhinus_ursinus__northern_fur_seal__HLcalUrs1__GCA_003265705.1/query_annotation.gff.gz
+GCA_003287225.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Phascolarctos_cinereus__Koala__HLphaCine3__GCA_003287225.2/query_annotation.gff.gz
+GCA_003327715.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Puma_concolor__puma__HLpumCon1__GCA_003327715.1/query_annotation.gff.gz
+GCA_003336285.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Mus_spicilegus__steppe_mouse__HLmusSpi1__GCA_003336285.1/query_annotation.gff.gz
+GCA_003426925.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Urocitellus_parryii__Arctic_ground_squirrel__HLuroPar1__GCA_003426925.1/query_annotation.gff.gz
+GCA_003668045.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Cricetulus_griseus__Chinese_hamster__HLcriGri3__GCA_003668045.1/query_annotation.gff.gz
+GCA_003676075.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Marmota_flaviventris__yellow-bellied_marmot__HLmarFla1__GCA_003676075.2/query_annotation.gff.gz
+GCA_003697995.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Taxidea_taxus_jeffersonii__American_badger__HLtaxTax1__GCA_003697995.1/query_annotation.gff.gz
+GCA_003704035.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Peromyscus_maniculatus_bairdii__prairie_deer_mouse__HLperManBai2__GCA_003704035.1/query_annotation.gff.gz
+GCA_003704135.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Peromyscus_polionotus_subgriseus__oldfield_mouse__HLperPol1__GCA_003704135.2/query_annotation.gff.gz
+GCA_003709585.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Acinonyx_jubatus__cheetah__HLaciJub2__GCA_003709585.1/query_annotation.gff.gz
+GCA_003798545.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Axis_porcinus__Hog_deer__HLaxiPor1__GCA_003798545.1/query_annotation.gff.gz
+GCA_003945745.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Oryx_gazella__gemsbok__HLoryGaz1__GCA_003945745.1/query_annotation.gff.gz
+GCA_004023785.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Mungos_mungo__banded_mongoose__HLmunMug1__GCA_004023785.1/query_annotation.gff.gz
+GCA_004023805.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Panthera_onca__jaguar__HLpanOnc1__GCA_004023805.1/query_annotation.gff.gz
+GCA_004023845.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Helogale_parvula__dwarf_mongoose__HLhelPar1__GCA_004023845.1/query_annotation.gff.gz
+GCA_004023905.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Suricata_suricatta__meerkat__HLsurSur2__GCA_004023905.1/query_annotation.gff.gz
+GCA_004023965.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Spilogale_gracilis__western_spotted_skunk__HLspiGra1__GCA_004023965.1/query_annotation.gff.gz
+GCA_004024585.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Paradoxurus_hermaphroditus__Asian_palm_civet__HLparHer1__GCA_004024585.1/query_annotation.gff.gz
+GCA_004024625.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Mellivora_capensis__ratel__HLmelCap1__GCA_004024625.1/query_annotation.gff.gz
+GCA_004024645.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Mirza_coquereli__Coquerels_mouse_lemur__HLmirCoq1__GCA_004024645.1/query_annotation.gff.gz
+GCA_004024665.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Lemur_catta__Ring-tailed_lemur__HLlemCat1__GCA_004024665.1/query_annotation.gff.gz
+GCA_004024685.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Dipodomys_stephensi__Stephenss_kangaroo_rat__HLdipSte1__GCA_004024685.1/query_annotation.gff.gz
+GCA_004024705.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Moschus_moschiferus__Siberian_musk_deer__HLmosMos1__GCA_004024705.2/query_annotation.gff.gz
+GCA_004024745.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Catagonus_wagneri__Chacoan_peccary__HLcatWag1__GCA_004024745.2/query_annotation.gff.gz
+GCA_004024765.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Zapus_hudsonius__meadow_jumping_mouse__HLzapHud1__GCA_004024765.1/query_annotation.gff.gz
+GCA_004024785.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Ateles_geoffroyi__black-handed_spider_monkey__HLateGeo1__GCA_004024785.1/query_annotation.gff.gz
+GCA_004024805.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Xerus_inauris__South_African_ground_squirrel__HLxerIna1__GCA_004024805.1/query_annotation.gff.gz
+GCA_004024825.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Pygathrix_nemaeus__Red_shanked_douc_langur__HLpygNem1__GCA_004024825.1/query_annotation.gff.gz
+GCA_004024845.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Tonatia_bakeri__stripe-headed_round-eared_bat__HLtonSau1__GCA_004024845.1/query_annotation.gff.gz
+GCA_004024885.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Saguinus_imperator__tamarin__HLsagImp1__GCA_004024885.1/query_annotation.gff.gz
+GCA_004024905.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Tapirus_indicus__Asiatic_tapir__HLtapInd1__GCA_004024905.1/query_annotation.gff.gz
+GCA_004024925.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Scalopus_aquaticus__eastern_mole__HLscaAqu1__GCA_004024925.1/query_annotation.gff.gz
+GCA_004024945.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Uropsilus_gracilis__gracile_shrew_mole__HLuroGra1__GCA_004024945.1/query_annotation.gff.gz
+GCA_004024965.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Tragulus_javanicus__Java_mouse-deer__HLtraJav1__GCA_004024965.2/query_annotation.gff.gz
+GCA_004024985.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Saiga_tatarica__saiga_antelope__HLsaiTat1__GCA_004024985.1/query_annotation.gff.gz
+GCA_004025025.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Tapirus_terrestris__Brazilian_tapir__HLtapTer1__GCA_004025025.1/query_annotation.gff.gz
+GCA_004025065.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Semnopithecus_entellus__Hanuman_langur__HLsemEnt1__GCA_004025065.1/query_annotation.gff.gz
+GCA_004025085.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Thryonomys_swinderianus__Greater_cane_rat__HLthrSwi1__GCA_004025085.1/query_annotation.gff.gz
+GCA_004025125.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Tolypeutes_matacus__southern_three-banded_armadillo__HLtolMat1__GCA_004025125.1/query_annotation.gff.gz
+GCA_004026525.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Miniopterus_schreibersii__Schreibers_long-fingered_bat__HLminSch1__GCA_004026525.1/query_annotation.gff.gz
+GCA_004026545.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Mormoops_blainvillei__Antillean_ghost-faced_bat__HLmorBla1__GCA_004026545.1/query_annotation.gff.gz
+GCA_004026585.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Noctilio_leporinus__greater_bulldog_bat__HLnocLep1__GCA_004026585.1/query_annotation.gff.gz
+GCA_004026605.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Ondatra_zibethicus__muskrat__HLondZib1__GCA_004026605.1/query_annotation.gff.gz
+GCA_004026625.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Pipistrellus_pipistrellus__common_pipistrelle__HLpipPip1__GCA_004026625.1/query_annotation.gff.gz
+GCA_004026645.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Pithecia_pithecia__white-faced_saki__HLpitPit1__GCA_004026645.1/query_annotation.gff.gz
+GCA_004026665.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Murina_feae__Little_tube-nosed_bat__HLmurAurFea1__GCA_004026665.1/query_annotation.gff.gz
+GCA_004026705.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Nesogale_talazaci__Talazacs_shrew_tenrec__HLmicTal1__GCA_004026705.1/query_annotation.gff.gz
+GCA_004026765.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Micronycteris_hirsuta__hairy_big-eared_bat__HLmicHir1__GCA_004026765.1/query_annotation.gff.gz
+GCA_004026805.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Lasiurus_borealis__red_bat__HLlasBor1__GCA_004026805.1/query_annotation.gff.gz
+GCA_004026825.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Nilgiritragus_hylocrius__Nilgiri_tahr__HLhemHyl1__GCA_004026825.1/query_annotation.gff.gz
+GCA_004026855.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Lepus_americanus__snowshoe_hare__HLlepAme1__GCA_004026855.1/query_annotation.gff.gz
+GCA_004026885.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Lyroderma_lyra__Indian_false_vampire__HLmegLyr2__GCA_004026885.1/query_annotation.gff.gz
+GCA_004026905.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Hystrix_cristata__crested_porcupine__HLhysCri1__GCA_004026905.1/query_annotation.gff.gz
+GCA_004026925.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Procavia_capensis__Cape_rock_hyrax__HLproCap3__GCA_004026925.2/query_annotation.gff.gz
+GCA_004026945.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Ovis_canadensis__bighorn_sheep__HLoviCan2__GCA_004026945.1/query_annotation.gff.gz
+GCA_004026965.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Petromus_typicus__dassie-rat__HLpetTyp1__GCA_004026965.1/query_annotation.gff.gz
+GCA_004027005.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Muscardinus_avellanarius__hazel_dormouse__HLmusAve1__GCA_004027005.1/query_annotation.gff.gz
+GCA_004027065.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Hippopotamus_amphibius__hippopotamus__HLhipAmp3__GCA_004027065.2/query_annotation.gff.gz
+GCA_004027085.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Mesoplodon_bidens__Sowerbys_beaked_whale__HLmesBid1__GCA_004027085.1/query_annotation.gff.gz
+GCA_004027145.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Daubentonia_madagascariensis__aye-aye__HLdauMad1__GCA_004027145.1/query_annotation.gff.gz
+GCA_004027165.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Ctenomys_sociabilis__social_tuco-tuco__HLcteSoc1__GCA_004027165.1/query_annotation.gff.gz
+GCA_004027185.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Glis_glis__Fat_dormouse__HLgliGli1__GCA_004027185.1/query_annotation.gff.gz
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+GCF_047511675.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Marmota_flaviventris__Yellow-bellied_marmot__HLmarFlav2A__GCF_047511675.1/query_annotation.gff.gz
+GCF_047675955.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Chlorocebus_sabaeus__Green_monkey__HLchlSaba4A__GCF_047675955.1/query_annotation.gff.gz
+GCF_048164855.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Canis_lupus_baileyi__Mexican_gray_wolf__HLcanLupBai8A__GCF_048164855.1/query_annotation.gff.gz
+GCF_048564905.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Vicugna_pacos__Alpaca__HLvicPaco5__GCF_048564905.1/query_annotation.gff.gz
+GCF_049350105.2	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Macaca_mulatta__Rhesus_monkey__HLmacMula11__GCF_049350105.2/query_annotation.gff.gz
+GCF_049852395.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Peromyscus_maniculatus_bairdii__Prairie_deer_mouse__HLperManiBai4__GCF_049852395.1/query_annotation.gff.gz
+GCF_050624435.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Tenrec_ecaudatus__Tailless_tenrec__HLtenEcau2A__GCF_050624435.1/query_annotation.gff.gz
+GCF_053574225.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Canis_aureus__Golden_jackal__HLcanAure1__GCF_053574225.1/query_annotation.gff.gz
+GCF_054371585.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Giraffa_tippelskirchi__Masai_giraffe__HLgirTipp3__GCF_054371585.1/query_annotation.gff.gz
+GCF_902635505.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Sarcophilus_harrisii__Tasmanian_devil__HLsarHarr4__GCF_902635505.1/query_annotation.gff.gz
+GCF_910594005.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Cervus_elaphus__red_deer__HLcerEla2__GCF_910594005.1/query_annotation.gff.gz
+GCF_947179515.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Apodemus_sylvaticus__European_woodmouse__HLapoSyl2__GCF_947179515.1/query_annotation.gff.gz
+GCF_949774975.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Lagenorhynchus_albirostris__white-beaked_dolphin__HLlagAlb1__GCF_949774975.1/query_annotation.gff.gz
+GCF_949786415.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Peromyscus_eremicus__Cactus_mouse__HLperErem2__GCF_949786415.1/query_annotation.gff.gz
+GCF_950005125.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Chionomys_nivalis__European_snow_vole__HLchiNiv1__GCF_950005125.1/query_annotation.gff.gz
+GCF_950295315.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Erinaceus_europaeus__western_European_hedgehog__HLeriEur3__GCF_950295315.1/query_annotation.gff.gz
+GCF_963259705.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Myotis_daubentonii__Daubentons_bat__HLmyoDau2__GCF_963259705.1/query_annotation.gff.gz
+GCF_963930625.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Muntiacus_reevesi__Reeves_muntjac__HLmunRee3__GCF_963930625.1/query_annotation.gff.gz
+GCF_964237555.1	https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1/Mammalia/Oryctolagus_cuniculus__Rabbit__HLoryCuni5__GCF_964237555.1/query_annotation.gff.gz
diff --git a/TOGA2/manifest.yaml b/TOGA2/manifest.yaml
new file mode 100644
index 0000000..688ee63
--- /dev/null
+++ b/TOGA2/manifest.yaml
@@ -0,0 +1,6 @@
+provider_name: "Hiller Lab, Senckenberg Research Institute"
+pipeline_method: "TOGA2 comparative genome annotation pipeline"
+pipeline_version: "2.0.9"
+project_display_name: "TOGA2 vertebrate gene annotations"
+description: "Comparative gene annotations generated with the TOGA2 pipeline. Different vertebrate clades were annotated using clade-specific reference assemblies for mammals, birds, testudines, and percomorph fishes. See the project homepage for details on reference assemblies and methodology."
+homepage_url: "https://genome.senckenberg.de"
diff --git a/scripts/generate_toga2_annotations.py b/scripts/generate_toga2_annotations.py
new file mode 100755
index 0000000..d22f6c2
--- /dev/null
+++ b/scripts/generate_toga2_annotations.py
@@ -0,0 +1,119 @@
+#!/usr/bin/env python3
+"""Generate annotrieve-registry TOGA2/annotations.tsv from Senckenberg directory listings."""
+
+from __future__ import annotations
+
+import argparse
+import re
+import sys
+import urllib.request
+from pathlib import Path
+
+TOGA2_BASE = "https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1"
+TSV_HEADER = "assembly_accession\taccess_url"
+ACCESSION_RE = re.compile(r"(GCA_\d+\.\d+|GCF_\d+\.\d+)")
+FOLDER_LINK_RE = re.compile(r'<a href="([^"]+/)"')
+GFF_FILE = "query_annotation.gff.gz"
+
+
+def fetch_index(url: str) -> str:
+    req = urllib.request.Request(url, headers={"User-Agent": "annotrieve-registry-generator/1.0"})
+    with urllib.request.urlopen(req, timeout=120) as resp:
+        return resp.read().decode("utf-8", errors="replace")
+
+
+def list_folders(index_url: str) -> list[str]:
+    html = fetch_index(index_url)
+    folders: list[str] = []
+    seen: set[str] = set()
+    for match in FOLDER_LINK_RE.finditer(html):
+        href = match.group(1)
+        if href in ("../", "./") or href.startswith("/"):
+            continue
+        name = href.rstrip("/")
+        if name and name not in seen:
+            seen.add(name)
+            folders.append(name)
+    return folders
+
+
+def extract_accession(folder_name: str) -> str | None:
+    match = ACCESSION_RE.search(folder_name)
+    return match.group(1) if match else None
+
+
+def folder_has_gff(folder_url: str) -> bool:
+    html = fetch_index(folder_url)
+    return f'href="{GFF_FILE}"' in html or f">{GFF_FILE}<" in html
+
+
+def build_rows(taxonomic_class: str, *, verify_gff: bool = True) -> list[tuple[str, str]]:
+    index_url = f"{TOGA2_BASE}/{taxonomic_class}/"
+    rows: list[tuple[str, str]] = []
+    skipped: list[str] = []
+    folders = list_folders(index_url)
+    for i, folder in enumerate(folders, start=1):
+        accession = extract_accession(folder)
+        if not accession:
+            continue
+        url = f"{index_url}{folder}/{GFF_FILE}"
+        if verify_gff:
+            folder_url = f"{index_url}{folder}/"
+            if not folder_has_gff(folder_url):
+                skipped.append(f"{accession} ({folder})")
+                continue
+            if i % 50 == 0:
+                print(f"verified {i}/{len(folders)} folders...", file=sys.stderr)
+        rows.append((accession, url))
+    if skipped:
+        print(f"skipped {len(skipped)} folders without {GFF_FILE}:", file=sys.stderr)
+        for entry in skipped:
+            print(f"  - {entry}", file=sys.stderr)
+    return rows
+
+
+def write_tsv(path: Path, rows: list[tuple[str, str]]) -> None:
+    accessions = [acc for acc, _ in rows]
+    urls = [url for _, url in rows]
+
+    dup_acc = sorted({a for a in accessions if accessions.count(a) > 1})
+    dup_url = sorted({u for u in urls if urls.count(u) > 1})
+    if dup_acc:
+        raise SystemExit(f"duplicate assembly_accession values: {dup_acc[:5]}")
+    if dup_url:
+        raise SystemExit(f"duplicate access_url values: {dup_url[:5]}")
+
+    path.parent.mkdir(parents=True, exist_ok=True)
+    lines = [TSV_HEADER] + [f"{acc}\t{url}" for acc, url in rows]
+    path.write_text("\n".join(lines) + "\n", encoding="utf-8")
+
+
+def main() -> None:
+    parser = argparse.ArgumentParser(description=__doc__)
+    parser.add_argument(
+        "--class",
+        dest="taxonomic_class",
+        default="Mammalia",
+        help="TOGA2 taxonomic class subdirectory (default: Mammalia)",
+    )
+    parser.add_argument(
+        "--output",
+        type=Path,
+        default=Path("TOGA2/annotations.tsv"),
+        help="Output TSV path relative to repo root (default: TOGA2/annotations.tsv)",
+    )
+    parser.add_argument(
+        "--no-verify-gff",
+        action="store_true",
+        help="Skip per-folder check that query_annotation.gff.gz exists",
+    )
+    args = parser.parse_args()
+
+    rows = build_rows(args.taxonomic_class, verify_gff=not args.no_verify_gff)
+    rows.sort(key=lambda row: row[0])
+    write_tsv(args.output, rows)
+    print(f"Wrote {len(rows)} rows to {args.output}", file=sys.stderr)
+
+
+if __name__ == "__main__":
+    main()
diff --git a/scripts/report_toga2_missing_gff.py b/scripts/report_toga2_missing_gff.py
new file mode 100755
index 0000000..d6a62e0
--- /dev/null
+++ b/scripts/report_toga2_missing_gff.py
@@ -0,0 +1,192 @@
+#!/usr/bin/env python3
+"""Report TOGA2 folders missing query_annotation.gff.gz across vertebrate clades."""
+
+from __future__ import annotations
+
+import argparse
+import re
+import sys
+import urllib.error
+import urllib.request
+from dataclasses import dataclass
+from pathlib import Path
+
+TOGA2_BASE = "https://genome.senckenberg.de/download/TOGA2/TOGA2integration/v1"
+DEFAULT_CLASSES = ("Mammalia", "Aves", "Percomorpha", "Testudines")
+ACCESSION_RE = re.compile(r"(GCA_\d+\.\d+|GCF_\d+\.\d+)")
+FOLDER_LINK_RE = re.compile(r'<a href="([^"]+/)"')
+GFF_FILE = "query_annotation.gff.gz"
+
+
+@dataclass(frozen=True)
+class MissingGffFolder:
+    taxonomic_class: str
+    folder_name: str
+    folder_url: str
+    assembly_accession: str | None
+
+
+def fetch_index(url: str) -> str | None:
+    req = urllib.request.Request(url, headers={"User-Agent": "annotrieve-registry-reporter/1.0"})
+    try:
+        with urllib.request.urlopen(req, timeout=120) as resp:
+            return resp.read().decode("utf-8", errors="replace")
+    except urllib.error.HTTPError as exc:
+        if exc.code == 404:
+            return None
+        raise
+
+
+def list_folders(index_url: str) -> list[str]:
+    html = fetch_index(index_url)
+    if html is None:
+        raise SystemExit(f"could not list folders at {index_url}")
+    folders: list[str] = []
+    seen: set[str] = set()
+    for match in FOLDER_LINK_RE.finditer(html):
+        href = match.group(1)
+        if href in ("../", "./") or href.startswith("/"):
+            continue
+        name = href.rstrip("/")
+        if name and name not in seen:
+            seen.add(name)
+            folders.append(name)
+    return folders
+
+
+def extract_accession(folder_name: str) -> str | None:
+    match = ACCESSION_RE.search(folder_name)
+    return match.group(1) if match else None
+
+
+def folder_has_gff(folder_url: str) -> bool:
+    html = fetch_index(folder_url)
+    if html is None:
+        return False
+    return f'href="{GFF_FILE}"' in html or f">{GFF_FILE}<" in html
+
+
+def scan_class(taxonomic_class: str) -> list[MissingGffFolder]:
+    index_url = f"{TOGA2_BASE}/{taxonomic_class}/"
+    missing: list[MissingGffFolder] = []
+    folders = list_folders(index_url)
+    for i, folder in enumerate(folders, start=1):
+        folder_url = f"{index_url}{folder}/"
+        if folder_has_gff(folder_url):
+            continue
+        missing.append(
+            MissingGffFolder(
+                taxonomic_class=taxonomic_class,
+                folder_name=folder,
+                folder_url=folder_url,
+                assembly_accession=extract_accession(folder),
+            )
+        )
+        if i % 50 == 0:
+            print(
+                f"[{taxonomic_class}] checked {i}/{len(folders)} folders "
+                f"({len(missing)} missing {GFF_FILE})...",
+                file=sys.stderr,
+            )
+    print(
+        f"[{taxonomic_class}] done: {len(folders)} folders, "
+        f"{len(missing)} missing {GFF_FILE}",
+        file=sys.stderr,
+    )
+    return missing
+
+
+def write_tsv(path: Path, entries: list[MissingGffFolder]) -> None:
+    path.parent.mkdir(parents=True, exist_ok=True)
+    lines = ["taxonomic_class\tfolder_name\tassembly_accession\tfolder_url"]
+    for entry in entries:
+        acc = entry.assembly_accession or ""
+        lines.append(f"{entry.taxonomic_class}\t{entry.folder_name}\t{acc}\t{entry.folder_url}")
+    path.write_text("\n".join(lines) + "\n", encoding="utf-8")
+
+
+def write_markdown(path: Path, entries: list[MissingGffFolder], classes: tuple[str, ...]) -> None:
+    path.parent.mkdir(parents=True, exist_ok=True)
+    by_class: dict[str, list[MissingGffFolder]] = {cls: [] for cls in classes}
+    for entry in entries:
+        by_class.setdefault(entry.taxonomic_class, []).append(entry)
+
+    with_accession = sum(1 for e in entries if e.assembly_accession)
+    without_accession = len(entries) - with_accession
+
+    lines = [
+        "# TOGA2 folders missing query_annotation.gff.gz",
+        "",
+        f"Base URL: [{TOGA2_BASE}/]({TOGA2_BASE}/)",
+        "",
+        "## Summary",
+        "",
+        "| Clade | Total folders missing GFF | With NCBI accession | Without accession |",
+        "|-------|---------------------------|---------------------|-------------------|",
+    ]
+    for cls in classes:
+        cls_entries = by_class.get(cls, [])
+        cls_with = sum(1 for e in cls_entries if e.assembly_accession)
+        lines.append(
+            f"| {cls} | {len(cls_entries)} | {cls_with} | {len(cls_entries) - cls_with} |"
+        )
+    lines.extend(
+        [
+            f"| **Total** | **{len(entries)}** | **{with_accession}** | **{without_accession}** |",
+            "",
+            "## Folders",
+            "",
+        ]
+    )
+
+    for cls in classes:
+        cls_entries = sorted(by_class.get(cls, []), key=lambda e: e.folder_name)
+        if not cls_entries:
+            continue
+        lines.append(f"### {cls}")
+        lines.append("")
+        for entry in cls_entries:
+            acc_suffix = f" (`{entry.assembly_accession}`)" if entry.assembly_accession else ""
+            lines.append(f"- [{entry.folder_name}]({entry.folder_url}){acc_suffix}")
+        lines.append("")
+
+    path.write_text("\n".join(lines) + "\n", encoding="utf-8")
+
+
+def main() -> None:
+    parser = argparse.ArgumentParser(description=__doc__)
+    parser.add_argument(
+        "--classes",
+        nargs="+",
+        default=list(DEFAULT_CLASSES),
+        help=f"TOGA2 clade subdirectories to scan (default: {' '.join(DEFAULT_CLASSES)})",
+    )
+    parser.add_argument(
+        "--output-tsv",
+        type=Path,
+        default=Path("reports/toga2_missing_gff.tsv"),
+        help="Output TSV path (default: reports/toga2_missing_gff.tsv)",
+    )
+    parser.add_argument(
+        "--output-md",
+        type=Path,
+        default=Path("reports/toga2_missing_gff.md"),
+        help="Output Markdown report path (default: reports/toga2_missing_gff.md)",
+    )
+    args = parser.parse_args()
+    classes = tuple(args.classes)
+
+    all_missing: list[MissingGffFolder] = []
+    for taxonomic_class in classes:
+        all_missing.extend(scan_class(taxonomic_class))
+
+    all_missing.sort(key=lambda e: (e.taxonomic_class, e.folder_name))
+    write_tsv(args.output_tsv, all_missing)
+    write_markdown(args.output_md, all_missing, classes)
+
+    print(f"Wrote {len(all_missing)} rows to {args.output_tsv}", file=sys.stderr)
+    print(f"Wrote report to {args.output_md}", file=sys.stderr)
+
+
+if __name__ == "__main__":
+    main()