pyproject.toml

[build-system]
requires = ["poetry_core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[tool.poetry]
name = "autojax"
version = "0.1.0"
description = "DiRAC: revealing the nature of dark matter with the James Webb space telescope and JAX"
license = "BSD-3-Clause"
keywords = [
    "JAX",
    "PyAutoGalaxy",
]
classifiers = [
    "Development Status :: 4 - Beta",
    "Environment :: Console",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: BSD License",
    "Operating System :: POSIX",
    "Operating System :: Unix",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: Implementation :: CPython",
    "Topic :: Utilities",
]
homepage = "https://ickc.github.io/python-autojax"
repository = "https://github.com/ickc/python-autojax"
documentation = "https://ickc.github.io/python-autojax"
authors = ["Kolen Cheung <christian.kolen@gmail.com>"]
readme = "README.md"
packages = [
    { include = "autojax", from = "src" },
]
include = [
    'CHANGELOG.md',
    'LICENSE',
    'README.md',
]

[tool.poetry.dependencies]
python = ">=3.9"
numpy = "*"
numba = "*"
jax = "*"
jaxlib = "*"

# extras
bump-my-version = {optional = true, version = "*"}
coloredlogs = {optional = true, version = "*"}

# tests
coverage = { optional = true, version = "*" }
pytest = {optional = true, version = "*"}
pytest-benchmark = {optional = true, version = "*"}

# docs
furo = {optional = true, version = "*"}
linkify-it-py = {optional = true, version = "*"}
myst-parser = {optional = true, version = "*"}
sphinx = {optional = true, version = "*"}
sphinx-autobuild = {optional = true, version = "*"}
sphinx-last-updated-by-git = {optional = true, version = "*"}
sphinxcontrib-apidoc = {optional = true, version = "*"}

[tool.poetry.extras]
extras = [
    "bump-my-version",
    "coloredlogs",
]
tests = [
    "coverage",
    "pytest",
]
docs = [
    "furo",
    "linkify-it-py",
    "myst-parser",
    "sphinx-autobuild",
    "sphinx-last-updated-by-git",
    "sphinx",
    "sphinxcontrib-apidoc",
]

[tool.poetry.scripts]
autojax_arch_info = 'autojax.system.arch_info:cli'
ini_formatter = 'autojax.util.cli.ini_formatter:cli'

[tool.coverage.paths]
source = [
    'src',
]

[tool.coverage.run]
branch = true
source = [
    'src',
]
relative_files = true

[tool.coverage.report]
show_missing = true
precision = 2

[tool.pytest.ini_options]
python_files = [
    'test_*.py',
    '*_test.py',
    'tests.py',
]

addopts = [
    '-ra',
    '--strict-markers',
    '--doctest-modules',
    '--doctest-glob=\*.rst',
    '--tb=short',
    '--benchmark-columns=mean,stddev,ops,rounds,iterations',
    '--benchmark-sort=mean',
]

testpaths = [
    'src/autojax',
]

[tool.isort]
line_length = 120
known_first_party = 'autojax'
default_section = 'THIRDPARTY'
forced_separate = 'tests'
profile = 'black'
skip = [
    '.eggs',
    'ci/templates',
    'build',
    'dist',
]

[tool.pylint.messages_control]
disable = "C0330, C0326"

[tool.pylint.format]
max-line-length = 120

[tool.black]
line-length = 120
target-version = ['py39']

[tool.jupytext]
formats = "ipynb,py:percent"

[tool.bumpversion]
current_version = "0.1.0"
commit = true
tag = true

[[tool.bumpversion.files]]
filename = "pyproject.toml"
search = 'version = "{current_version}"'
replace = 'version = "{new_version}"'

[[tool.bumpversion.files]]
filename = "docs/conf.py"
search = 'release = "{current_version}"'
replace = 'release = "{new_version}"'

[[tool.bumpversion.files]]
filename = "src/autojax/__init__.py"
search = '__version__ = "{current_version}"'
replace = '__version__ = "{new_version}"'

[tool.mypy]
plugins = 'numpy.typing.mypy_plugin'
#* Import discovery
mypy_path = "src"
# files
# exclude
# namespace_packages
# explicit_package_bases
ignore_missing_imports = true
# follow_imports
# follow_imports_for_stubs
# python_executable
# no_site_packages
# no_silence_site_packages

#* Platform configuration...

#* Disallow dynamic typing
disallow_any_unimported = false
disallow_any_expr = false
disallow_any_decorated = false
disallow_any_explicit = false
disallow_any_generics = true
disallow_subclassing_any = false

#* Untyped definitions and calls
disallow_untyped_calls = false
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
disallow_untyped_decorators = false

#* None and Optional handling
no_implicit_optional = true
strict_optional = true

#* Configuring warnings
warn_redundant_casts = true
warn_unused_ignores = true
warn_no_return = true
warn_return_any = false
warn_unreachable = true

#* Suppressing errors...

#* Miscellaneous strictness flags...

#* Configuring error messages
show_error_context = false
show_column_numbers = false
show_error_codes = true
pretty = false
color_output = true
error_summary = true
show_absolute_path = false

#* Incremental mode...

#* Advanced options...

#* Report generation...

#* Miscellaneous
# junit_xml
# scripts_are_modules
warn_unused_configs = true
# verbosity