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183 lines (183 loc) · 8.74 KB
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{
"name": "nf-core/seqinspector",
"homePage": "https://github.com/nf-core/seqinspector",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bbmap/clumpify": {
"branch": "master",
"git_sha": "f946047c97ed78d3cdcecdc64169c7f9faef99df",
"installed_by": ["modules"],
"patch": "modules/nf-core/bbmap/clumpify/bbmap-clumpify.diff"
},
"bwamem2/index": {
"branch": "master",
"git_sha": "62ce917fd775aaef732eb82019de069c765adfd3",
"installed_by": ["modules"]
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "62ce917fd775aaef732eb82019de069c765adfd3",
"installed_by": ["modules"]
},
"checkqc": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/checkqc/checkqc.diff"
},
"chelae/trim": {
"branch": "master",
"git_sha": "0819fb5b80a4b86b31f35bf96e53a9d65e160520",
"installed_by": ["modules"],
"patch": "modules/nf-core/chelae/trim/chelae-trim.diff"
},
"fastp": {
"branch": "master",
"git_sha": "826a9b28d6da61097d60e1923bb8a2e51de3c5b4",
"installed_by": ["modules"],
"patch": "modules/nf-core/fastp/fastp.diff"
},
"fastqc": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/fastqc/fastqc.diff"
},
"fastqe": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/fastqe/fastqe.diff"
},
"fastqscreen/fastqscreen": {
"branch": "master",
"git_sha": "a0961c41021561ac7cf139f86bd7812a2f99e994",
"installed_by": ["modules"],
"patch": "modules/nf-core/fastqscreen/fastqscreen/fastqscreen-fastqscreen.diff"
},
"fq/lint": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/fq/lint/fq-lint.diff"
},
"kraken2/kraken2": {
"branch": "master",
"git_sha": "d67d33d5925fcec4691b499670fa2bd926fd2be5",
"installed_by": ["modules"],
"patch": "modules/nf-core/kraken2/kraken2/kraken2-kraken2.diff"
},
"krona/ktimporttaxonomy": {
"branch": "master",
"git_sha": "10d22ca9b72ecea28167f289df13a81ceb12d085",
"installed_by": ["modules"],
"patch": "modules/nf-core/krona/ktimporttaxonomy/krona-ktimporttaxonomy.diff"
},
"krona/ktupdatetaxonomy": {
"branch": "master",
"git_sha": "10d22ca9b72ecea28167f289df13a81ceb12d085",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "98403d15b0e50edae1f3fec5eae5e24982f1fade",
"installed_by": ["modules"]
},
"multiqcsav": {
"branch": "master",
"git_sha": "98403d15b0e50edae1f3fec5eae5e24982f1fade",
"installed_by": ["modules"]
},
"picard/collecthsmetrics": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/picard/collecthsmetrics/picard-collecthsmetrics.diff"
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/picard/collectmultiplemetrics/picard-collectmultiplemetrics.diff"
},
"picard/createsequencedictionary": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"riker/multi": {
"branch": "master",
"git_sha": "da4b4aa519d032c6689cb7d27c6dda496f657989",
"installed_by": ["modules"],
"patch": "modules/nf-core/riker/multi/riker-multi.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["modules"]
},
"seqfu/stats": {
"branch": "master",
"git_sha": "e0c07e2169e7569da58d8d8c3ca71023fc6a217e",
"installed_by": ["modules"],
"patch": "modules/nf-core/seqfu/stats/seqfu-stats.diff"
},
"seqkit/stats": {
"branch": "master",
"git_sha": "d07a945f421a4a91ce4e5a22db63e0e7f8741607",
"installed_by": ["modules"],
"patch": "modules/nf-core/seqkit/stats/seqkit-stats.diff"
},
"seqtk/sample": {
"branch": "master",
"git_sha": "d672aca9cdef89ee649b340c08877ae40a19d5c0",
"installed_by": ["modules"]
},
"sequali": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/sequali/sequali.diff"
},
"toulligqc": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/toulligqc/toulligqc.diff"
},
"untar": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "1a545fcbd762911c21a64ced3dbef99b2b51ac75",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "a3fb7351b1fdb2b1de282b765816bbea190e86a8",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "a7b27fd25bfa8dcc07d299e88bd790585901a436",
"installed_by": ["subworkflows"]
}
}
}
}
}
}