From 391cbd994caec541b90951eb025a688fc90ddbf3 Mon Sep 17 00:00:00 2001 From: Stephan Schiffels Date: Fri, 18 Sep 2026 17:39:01 +0200 Subject: [PATCH 1/2] bumped to use newer sequence-formats with more helpful error messages --- stack.yaml | 2 +- stack.yaml.lock | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/stack.yaml b/stack.yaml index bb2f88f5..3648bfbf 100644 --- a/stack.yaml +++ b/stack.yaml @@ -6,6 +6,6 @@ extra-deps: - table-layout-0.9.1.0 # not available any more in lts-22.43 # - sequence-formats-1.11.0.2 # not available yet in lts-22.43 - git: https://github.com/stschiff/sequence-formats - commit: c041087f4f4f563625f141346ef69186cd685c21 + commit: 1a8081993a72ddf44db735a9d335fc62e7a903d0 - scotty-0.22 # not available yet in lts-22.43 allow-newer: true diff --git a/stack.yaml.lock b/stack.yaml.lock index cc69428f..2c70f351 100644 --- a/stack.yaml.lock +++ b/stack.yaml.lock @@ -12,15 +12,15 @@ packages: original: hackage: table-layout-0.9.1.0 - completed: - commit: c041087f4f4f563625f141346ef69186cd685c21 + commit: 1a8081993a72ddf44db735a9d335fc62e7a903d0 git: https://github.com/stschiff/sequence-formats name: sequence-formats pantry-tree: - sha256: 3696aae63bb2ca89160fb36aa0b412220892547f4fb4fcea25f6df43c884c47a + sha256: f3cdcb5d2d670c4af147aadbe2a4e300cbbd0faf6d8aeb6721b207ea64d4f4ff size: 3026 version: 1.11.0.3 original: - commit: c041087f4f4f563625f141346ef69186cd685c21 + commit: 1a8081993a72ddf44db735a9d335fc62e7a903d0 git: https://github.com/stschiff/sequence-formats - completed: hackage: scotty-0.22@sha256:b3c799b3c4896176342062c1140c290ffb9a8d81e6da2ea3e12f7a83cbda78d4,6013 From 84734f2809e031e4738bd614382c83629ad58363 Mon Sep 17 00:00:00 2001 From: Stephan Schiffels Date: Fri, 18 Sep 2026 17:46:17 +0200 Subject: [PATCH 2/2] bumped version --- CHANGELOG.md | 2 ++ poseidon-hs.cabal | 2 +- stack.yaml | 2 +- stack.yaml.lock | 8 ++++---- .../genoconvert/out_vcf/Schiffels_2016.vcf.gz | Bin 493 -> 493 bytes 5 files changed, 8 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d98f173f..c6dd7d05 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,5 @@ +- V 2.2.2.2: + - uses newer version of sequence-formats, improving - V 2.2.2.1: - Update of the sequence-formats dependency because of a purely technical build issue on windows, caused by a non-standard directory name. - V 2.2.2.0: diff --git a/poseidon-hs.cabal b/poseidon-hs.cabal index 1c0f4468..6ad6f8d4 100644 --- a/poseidon-hs.cabal +++ b/poseidon-hs.cabal @@ -1,5 +1,5 @@ name: poseidon-hs -version: 2.2.2.1 +version: 2.2.2.2 synopsis: A package with tools for working with Poseidon genotype data description: The tools in this package read and analyse Poseidon-formatted genotype databases, a modular system for storing genotype data from thousands of individuals. license: MIT diff --git a/stack.yaml b/stack.yaml index 3648bfbf..a8c295a3 100644 --- a/stack.yaml +++ b/stack.yaml @@ -6,6 +6,6 @@ extra-deps: - table-layout-0.9.1.0 # not available any more in lts-22.43 # - sequence-formats-1.11.0.2 # not available yet in lts-22.43 - git: https://github.com/stschiff/sequence-formats - commit: 1a8081993a72ddf44db735a9d335fc62e7a903d0 + commit: 33fcbe867647a834105a7ee02081c14e2dcba575 - scotty-0.22 # not available yet in lts-22.43 allow-newer: true diff --git a/stack.yaml.lock b/stack.yaml.lock index 2c70f351..5e5e97ac 100644 --- a/stack.yaml.lock +++ b/stack.yaml.lock @@ -12,15 +12,15 @@ packages: original: hackage: table-layout-0.9.1.0 - completed: - commit: 1a8081993a72ddf44db735a9d335fc62e7a903d0 + commit: 33fcbe867647a834105a7ee02081c14e2dcba575 git: https://github.com/stschiff/sequence-formats name: sequence-formats pantry-tree: - sha256: f3cdcb5d2d670c4af147aadbe2a4e300cbbd0faf6d8aeb6721b207ea64d4f4ff + sha256: 7ac8b9e8b9600769bbf74c4a9d8016bd9e130a55873825ea35df685e15b627db size: 3026 - version: 1.11.0.3 + version: 1.11.0.4 original: - commit: 1a8081993a72ddf44db735a9d335fc62e7a903d0 + commit: 33fcbe867647a834105a7ee02081c14e2dcba575 git: https://github.com/stschiff/sequence-formats - completed: hackage: scotty-0.22@sha256:b3c799b3c4896176342062c1140c290ffb9a8d81e6da2ea3e12f7a83cbda78d4,6013 diff --git a/test/PoseidonGoldenTests/GoldenTestData/genoconvert/out_vcf/Schiffels_2016.vcf.gz b/test/PoseidonGoldenTests/GoldenTestData/genoconvert/out_vcf/Schiffels_2016.vcf.gz index 7277eb16fd85c63f4e03122c8499c35b5b673f69..8de0bfebe4b3c31fd5d5f137b43c1772618a822e 100644 GIT binary patch delta 417 zcmV;S0bc&?1MLF}ABzY800000027f4Sbx@B{LQH>Zr3DFFRb#m;TBYW(^bjo@|^MR z#Cn#qIy)p4`|YjOK{fZf=)ftn@&Q|6G~3%xiXHr8;NTq0Fvz zR^;9jexejdB}y;XS5_%Mv-+&e(>i_n!g0ZJ6+iD9U}aHx?TS^EQlHaYvFIm(sDE0- zIlVLGr4Ipv2>2%=+^zk%K`i2jvLfE*{3K%+EH7&QQY@Z*-Gyti4I{FglihPb{8dc8 zefL)cgAvg&f`1_U{hm@l(NPQ(6U9QYQKl#kirWa#5s;~+TeeLgY0ZN8L?c^2ipVDN zfRaT_=!6oOK<}XMp3@vtr(keeYky+S8=?u7hcqW>E>Il=4UL@56|l!R+C=L{>O^x* z*S1U!YmMI%?X4jCu{epQ6QJNsd8_s0&B;6$D}_!~7!Epft#5FqWf;)l&<*Xwe+=X~ zu4N&walP?y3HEGgBQTx~zz>JOp^M3EFdj%{%e=OGKpoqd3SR4aw)SJZ#||^oJdgeY L*DfrF+XMgr-I2+q delta 417 zcmV;S0bc&?1MLF}ABzY80000000WT-tN3}>04s~iYgeqQl=__JibX#OM1R#H z&gq>gFMS9YM8H20;co564Pp^Llojzd=O-DvV0lsVmtyhk>n>cAZ5WZ|oa~+h;;&-z z?YqAs7>tOH5&Q$$@As4fijHESm?##CjWR`XP~1j0Noy9wCmPxMQA9S8 z2b3&gLMN2K1bPR3_nhXKIt7E%T7MIB-VjZwJft~6bAjq0XlUeYu7Ewp(I#3qQYV^g zy0&F!f?=;Ykh+=EyI8Yhi+&e{$n7| zaV-mZjq8nvOR#4{8-ej`0Dd?G4qZ%UgYiHrTjsUh1M1kuRPb8Yv$Y@NJr16k=6UoN Lmlu9f+XMgrNJYhq