plot_gsva_heatmap default pathway ranking #70
Answered
by
YizhenChen
YizhenChen
asked this question in
Q&A
|
Hi, What is the default pathway ranking for the plot_gsva_heatmap function if I did not specify the pathway IDs? It is neither the pathway ID number nor the results from the "maximum differently expressed pathway" based on my observation. Thank you very much! |
Answered by
YizhenChen
Jan 16, 2023
Replies: 2 comments
|
Oops. I found it first selected a number of pathways based on the maximum differently expressed pathway result, then ranked them by the pathway ID. I just plotted too many pathways at once and overlooked some information. I understand now. Please delete the post if it is misleading. |
0 replies
Answer selected by
jgriss
|
Dear @YizhenChen Thanks a lot for posting the solution! |
0 replies
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Oops. I found it first selected a number of pathways based on the maximum differently expressed pathway result, then ranked them by the pathway ID. I just plotted too many pathways at once and overlooked some information. I understand now. Please delete the post if it is misleading.