From 32b859a3e43b7c76bc8aa70961d8ce81b0c06b64 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 21 Sep 2026 14:56:38 +0000 Subject: [PATCH] chore(deps): bump the actions-deps group across 1 directory with 8 updates Bumps the actions-deps group with 8 updates in the / directory: | Package | From | To | | --- | --- | --- | | [actions/checkout](https://github.com/actions/checkout) | `7.0.0` | `7.0.1` | | [astral-sh/setup-uv](https://github.com/astral-sh/setup-uv) | `8.3.2` | `10.1.0` | | [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) | `1.14.0` | `1.14.2` | | [actions/cache](https://github.com/actions/cache) | `4.3.0` | `6.1.0` | | [actions/setup-python](https://github.com/actions/setup-python) | `6.3.0` | `7.0.0` | | [actions/upload-artifact](https://github.com/actions/upload-artifact) | `4.6.2` | `7.0.1` | | [codecov/codecov-action](https://github.com/codecov/codecov-action) | `7.0.0` | `7.1.0` | | [re-actors/alls-green](https://github.com/re-actors/alls-green) | `1.2.2` | `1.3.0` | Updates `actions/checkout` from 7.0.0 to 7.0.1 - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0...3d3c42e5aac5ba805825da76410c181273ba90b1) Updates `astral-sh/setup-uv` from 8.3.2 to 10.1.0 - [Release notes](https://github.com/astral-sh/setup-uv/releases) - [Commits](https://github.com/astral-sh/setup-uv/compare/11f9893b081a58869d3b5fccaea48c9e9e46f990...bec219d24cd3e171d82865faccec33120bb574f4) Updates `pypa/gh-action-pypi-publish` from 1.14.0 to 1.14.2 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/cef221092ed1bacb1cc03d23a2d87d1d172e277b...dc37677b2e1c63e2034f94d8a5b11f265b73ba33) Updates `actions/cache` from 4.3.0 to 6.1.0 - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/0057852bfaa89a56745cba8c7296529d2fc39830...55cc8345863c7cc4c66a329aec7e433d2d1c52a9) Updates `actions/setup-python` from 6.3.0 to 7.0.0 - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/ece7cb06caefa5fff74198d8649806c4678c61a1...5fda3b95a4ea91299a34e894583c3862153e4b97) Updates `actions/upload-artifact` from 4.6.2 to 7.0.1 - [Release notes](https://github.com/actions/upload-artifact/releases) - [Commits](https://github.com/actions/upload-artifact/compare/ea165f8d65b6e75b540449e92b4886f43607fa02...043fb46d1a93c77aae656e7c1c64a875d1fc6a0a) Updates `codecov/codecov-action` from 7.0.0 to 7.1.0 - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/fb8b3582c8e4def4969c97caa2f19720cb33a72f...0b35c9ecc4f0529d0eb674914510c22f85b196b4) Updates `re-actors/alls-green` from 1.2.2 to 1.3.0 - [Release notes](https://github.com/re-actors/alls-green/releases) - [Commits](https://github.com/re-actors/alls-green/compare/05ac9388f0aebcb5727afa17fcccfecd6f8ec5fe...b5b5b37504aa4183270bd3d855c52a67f212be35) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: 7.0.1 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions-deps - dependency-name: astral-sh/setup-uv dependency-version: 10.1.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions-deps - dependency-name: pypa/gh-action-pypi-publish dependency-version: 1.14.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions-deps - dependency-name: actions/cache dependency-version: 6.1.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions-deps - dependency-name: actions/setup-python dependency-version: 7.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions-deps - dependency-name: actions/upload-artifact dependency-version: 7.0.1 dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions-deps - dependency-name: codecov/codecov-action dependency-version: 7.1.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: actions-deps - dependency-name: re-actors/alls-green dependency-version: 1.3.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: actions-deps ... Signed-off-by: dependabot[bot] --- .github/workflows/build.yaml | 4 ++-- .github/workflows/release.yaml | 6 +++--- .github/workflows/test-notebooks.yaml | 14 +++++++------- .github/workflows/test.yaml | 28 +++++++++++++-------------- 4 files changed, 26 insertions(+), 26 deletions(-) diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml index 6cca7d4d7..184657e63 100644 --- a/.github/workflows/build.yaml +++ b/.github/workflows/build.yaml @@ -17,13 +17,13 @@ jobs: package: runs-on: ubuntu-latest steps: - - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: filter: blob:none fetch-depth: 0 persist-credentials: false - name: Install uv - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + uses: astral-sh/setup-uv@bec219d24cd3e171d82865faccec33120bb574f4 # v10.1.0 - name: Build package run: uv build - name: Check package diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml index aa98d6db1..a63cf9ae7 100644 --- a/.github/workflows/release.yaml +++ b/.github/workflows/release.yaml @@ -18,16 +18,16 @@ jobs: contents: read id-token: write # IMPORTANT: this permission is mandatory for trusted publishing steps: - - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: filter: blob:none fetch-depth: 0 persist-credentials: false - name: Install uv - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + uses: astral-sh/setup-uv@bec219d24cd3e171d82865faccec33120bb574f4 # v10.1.0 with: enable-cache: false - name: Build package run: uv build - name: Publish package distributions to PyPI - uses: pypa/gh-action-pypi-publish@cef221092ed1bacb1cc03d23a2d87d1d172e277b # v1.14.0 + uses: pypa/gh-action-pypi-publish@dc37677b2e1c63e2034f94d8a5b11f265b73ba33 # v1.14.2 diff --git a/.github/workflows/test-notebooks.yaml b/.github/workflows/test-notebooks.yaml index 528543925..a990d6ef3 100644 --- a/.github/workflows/test-notebooks.yaml +++ b/.github/workflows/test-notebooks.yaml @@ -21,21 +21,21 @@ jobs: ensure-data-is-cached: runs-on: ubuntu-latest steps: - - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: filter: blob:none fetch-depth: 0 persist-credentials: false - name: Install uv - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + uses: astral-sh/setup-uv@bec219d24cd3e171d82865faccec33120bb574f4 # v10.1.0 with: enable-cache: false python-version: "3.14" - name: Restore data cache id: data-cache - uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 + uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0 with: path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes key: data-${{ hashFiles('**/download_data.py') }} @@ -58,16 +58,16 @@ jobs: python: ["3.12"] steps: - - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: submodules: recursive persist-credentials: false - name: Set up Python ${{ matrix.python }} - uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0 + uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0 with: python-version: ${{ matrix.python }} - - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + - uses: astral-sh/setup-uv@bec219d24cd3e171d82865faccec33120bb574f4 # v10.1.0 with: enable-cache: true python-version: ${{ matrix.python }} @@ -75,7 +75,7 @@ jobs: - name: Restore data cache id: data-cache - uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 + uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0 with: path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes key: data-${{ hashFiles('**/download_data.py') }} diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml index ffacbe3da..a07efbfb2 100644 --- a/.github/workflows/test.yaml +++ b/.github/workflows/test.yaml @@ -32,21 +32,21 @@ jobs: ensure-data-is-cached: runs-on: ubuntu-latest steps: - - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: filter: blob:none fetch-depth: 0 persist-credentials: false - name: Install uv - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + uses: astral-sh/setup-uv@bec219d24cd3e171d82865faccec33120bb574f4 # v10.1.0 with: enable-cache: false python-version: "3.14" - name: Restore data cache id: data-cache - uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 + uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0 with: path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes key: data-${{ hashFiles('**/download_data.py') }} @@ -68,14 +68,14 @@ jobs: outputs: envs: ${{ steps.get-envs.outputs.envs }} steps: - - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: filter: blob:none fetch-depth: 0 persist-credentials: false - name: Install uv - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + uses: astral-sh/setup-uv@bec219d24cd3e171d82865faccec33120bb574f4 # v10.1.0 with: enable-cache: true cache-dependency-glob: pyproject.toml @@ -113,14 +113,14 @@ jobs: runs-on: ${{ matrix.os }} continue-on-error: ${{ contains(matrix.env.name, 'pre') }} steps: - - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: filter: blob:none fetch-depth: 0 persist-credentials: false - name: Install uv - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + uses: astral-sh/setup-uv@bec219d24cd3e171d82865faccec33120bb574f4 # v10.1.0 with: python-version: ${{ matrix.env.python }} cache-dependency-glob: pyproject.toml @@ -130,7 +130,7 @@ jobs: - name: Restore data cache id: data-cache - uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 + uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0 with: path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes key: data-${{ hashFiles('**/download_data.py') }} @@ -163,7 +163,7 @@ jobs: - name: Archive figures generated during testing if: always() - uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4.6.2 + uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1 with: name: visual_test_results_${{ runner.os }}_${{ matrix.env.name }} path: ${{ github.workspace }}/tests/figures/* @@ -176,14 +176,14 @@ jobs: id-token: write # for codecov OIDC contents: read steps: - - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: filter: blob:none fetch-depth: 0 persist-credentials: false - name: Install uv - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + uses: astral-sh/setup-uv@bec219d24cd3e171d82865faccec33120bb574f4 # v10.1.0 with: python-version: "3.14" cache-dependency-glob: pyproject.toml @@ -193,7 +193,7 @@ jobs: - name: Restore data cache id: coverage-data-cache - uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 + uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0 with: path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes key: data-${{ hashFiles('**/download_data.py') }} @@ -224,7 +224,7 @@ jobs: uvx hatch run hatch-test.py3.14-stable:cov-report - name: Upload coverage - uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f # v7.0.0 + uses: codecov/codecov-action@0b35c9ecc4f0529d0eb674914510c22f85b196b4 # v7.1.0 with: use_oidc: true fail_ci_if_error: true @@ -241,6 +241,6 @@ jobs: - coverage runs-on: ubuntu-latest steps: - - uses: re-actors/alls-green@05ac9388f0aebcb5727afa17fcccfecd6f8ec5fe # v1.2.2 + - uses: re-actors/alls-green@b5b5b37504aa4183270bd3d855c52a67f212be35 # v1.3.0 with: jobs: ${{ toJSON(needs) }}