Issues

• Include HUGO gene symbol in eqtl data sets

  statgen/bravo_data_prep#17 · Filter by author grosscol opened on Mar 5, 2025

• Use rs id to index eqtl data

  statgen/bravo_data_prep#16 · Filter by author grosscol opened on Jan 29, 2025

• Calculate depth from allele depth for vcfs without dp field

  statgen/bravo_data_prep#14 · Filter by author xiaoh11 opened on Feb 12, 2024

• Add samples count step as a results output

  statgen/bravo_data_prep#9 · Filter by author grosscol opened on Dec 6, 2023

• Extract allele frequency data from 1000G VCFs

  statgen/bravo_data_prep#5 · Filter by author grosscol opened on Apr 28, 2023

• Coverage: investigate and better handle tabix indexing concatenated bgzipped files.

  statgen/bravo_data_prep#4 · Filter by author grosscol opened on Mar 3, 2023

• Add input vcf validation step to prepare vcf pipeline

  statgen/bravo_data_prep#2 · Filter by author grosscol opened on Jul 12, 2022

• Extract data processing custom tools to own repos

  statgen/bravo_data_prep#1 · Filter by author grosscol opened on May 4, 2022