Issues

• Support for bcftools call -m (multiallelic caller) in bamCaller.py

  stschiff/msmc-tools#61 · Filter by author FWFKI opened on May 16, 2025
  2

• generate_multihetsep.py generates no output

  stschiff/msmc-tools#58 · Filter by author MatteoSebastianelli opened on Jan 6, 2025
  1

• To put together the input file

  stschiff/msmc-tools#56 · Filter by author vlnaraujo opened on Nov 28, 2023
  3

• Sudden expansion and contraction of a population

  stschiff/msmc-tools#55 · Filter by author jaurbanChicago opened on Oct 25, 2023
  1

• Two subspecies populations don't coalesce further back in the past

  stschiff/msmc-tools#50 · Filter by author kaede0e opened on Mar 20, 2023
  2

• the command line can not be run with "nohup"

  stschiff/msmc-tools#49 · Filter by author cnxiaobo94 opened on Feb 21, 2023
  1

• generating multihetsep.txt files for whole genomes - multiple chromosomes

  stschiff/msmc-tools#48 · Filter by author killidude opened on Feb 6, 2023
  1

• Is it necessary to analyse all eight haplotypes

  stschiff/msmc-tools#47 · Filter by author jiangzy26 opened on Nov 11, 2022
  1

• Change in time segments with masking

  stschiff/msmc-tools#46 · Filter by author EEPuckett opened on Aug 31, 2022
  3

• AssertionError while using generate_multihetsep.py

  stschiff/msmc-tools#45 · Filter by author Luker121 opened on Aug 24, 2022
  1

• Should the individual mask bed be a subset of Mappability mask ?

  stschiff/msmc-tools#40 · Filter by author sandyplus opened on May 18, 2021
  1

• inconsistencies in population size showing in the latest tutorial

  stschiff/msmc-tools#39 · Filter by author biozzq opened on May 18, 2021
  1

• Got "IndexError: list index out of range" in generate_multihetsep.py

  stschiff/msmc-tools#31 · Filter by author ymatmt opened on Jun 2, 2020
  12