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Scripts used for Díaz-Gay, dos Santos, Moody, et al. 2025 manuscript.

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Supplementary_Note
Supplementary_Note
 
 
0_Create_df.R
0_Create_df.R
 
 
1a_Map_Samples.R
1a_Map_Samples.R
 
 
1c_SBS_vs_CN-ID.R
1c_SBS_vs_CN-ID.R
 
 
1d_eoCRC_TMB.R
1d_eoCRC_TMB.R
 
 
1e-g_Average_mutational_profiles.R
1e-g_Average_mutational_profiles.R
 
 
1e-g_Average_mutational_profiles.py
1e-g_Average_mutational_profiles.py
 
 
2a_Dotplot_Volcano_Country.R
2a_Dotplot_Volcano_Country.R
 
 
2b-c_Map_Signature_Prev.R
2b-c_Map_Signature_Prev.R
 
 
2d_Volcano_ASR.R
2d_Volcano_ASR.R
 
 
2e-f_EDF6a-b_ASR.R
2e-f_EDF6a-b_ASR.R
 
 
3a_Volcano_age_eo.R
3a_Volcano_age_eo.R
 
 
3b_Signature_Prev_age_group.R
3b_Signature_Prev_age_group.R
 
 
3c-e_Signature_Trends_age_group.R
3c-e_Signature_Trends_age_group.R
 
 
4a_Evol_Analysis.R
4a_Evol_Analysis.R
 
 
4b-d_Microb_Analysis.R
4b-d_Microb_Analysis.R
 
 
5a_Drivers_Prev.R
5a_Drivers_Prev.R
 
 
5b_eoCRC_driver_mutations.R
5b_eoCRC_driver_mutations.R
 
 
5c_Volcano_age_eo_Drivers.R
5c_Volcano_age_eo_Drivers.R
 
 
5d_Drivers_Prev_age_group.R
5d_Drivers_Prev_age_group.R
 
 
5e-f_Drivers_Signature_Probabilities.R
5e-f_Drivers_Signature_Probabilities.R
 
 
EDF10a-b_Drivers_Signature_Probabilities_age_eo.R
EDF10a-b_Drivers_Signature_Probabilities_age_eo.R
 
 
EDF10c-d_CMGs_Signature_Probabilities.R
EDF10c-d_CMGs_Signature_Probabilities.R
 
 
EDF10e-f_Drivers_Countries_Signature_Probabilities.R
EDF10e-f_Drivers_Countries_Signature_Probabilities.R
 
 
EDF2_Country_TMB.R
EDF2_Country_TMB.R
 
 
EDF6c_ASR_eoCRC.R
EDF6c_ASR_eoCRC.R
 
 
EDF7a-b_Colibactin_Motif.R
EDF7a-b_Colibactin_Motif.R
 
 
EDF7c_Colibactin_Trends_age_group.R
EDF7c_Colibactin_Trends_age_group.R
 
 
EDF9_SF1-4_Selected_samples.R
EDF9_SF1-4_Selected_samples.R
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
SF10a_Ancestry_distribution.R
SF10a_Ancestry_distribution.R
 
 
SF10b_Ethnicity_Distribution.R
SF10b_Ethnicity_Distribution.R
 
 
SF14a_Germline_MSS.R
SF14a_Germline_MSS.R
 
 
SF14b_Germline_MSI.R
SF14b_Germline_MSI.R
 
 
SF5_barplots_prev.R
SF5_barplots_prev.R
 
 
SF6a_ethnicity_Fig1d.R
SF6a_ethnicity_Fig1d.R
 
 
SF6b_ethnicity_Fig3a.R
SF6b_ethnicity_Fig3a.R
 
 
SF6c-e_ethnicity_Fig3c-e.R
SF6c-e_ethnicity_Fig3c-e.R
 
 
SF7a_ancestry_PCs_Fig1d.R
SF7a_ancestry_PCs_Fig1d.R
 
 
SF7b_ancestry_PCs_Fig3a.R
SF7b_ancestry_PCs_Fig3a.R
 
 
SF7c-e_ancestry_PCs_Fig3c-e.R
SF7c-e_ancestry_PCs_Fig3c-e.R
 
 
SF8a_ancestry_labels_Fig1d.R
SF8a_ancestry_labels_Fig1d.R
 
 
SF8b_ancestry_labels_Fig3a.R
SF8b_ancestry_labels_Fig3a.R
 
 
SF8c-e_ancestry_labels_Fig3c-e.R
SF8c-e_ancestry_labels_Fig3c-e.R
 
 
SF9_Tumor_subsite.R
SF9_Tumor_subsite.R
 
 
ST24-25_MSS_Drivers_Country.R
ST24-25_MSS_Drivers_Country.R
 
 
ST43_MSI_Signatures_Country.R
ST43_MSI_Signatures_Country.R
 
 
ST44_MSI_Signatures_age_eo.R
ST44_MSI_Signatures_age_eo.R
 
 
ST45_MSI_Signatures_Country_No_Lynch.R
ST45_MSI_Signatures_Country_No_Lynch.R
 
 
ST46_MSI_Signatures_age_eo_No_Lynch.R
ST46_MSI_Signatures_age_eo_No_Lynch.R
 
 
ST47-48_MSI_Drivers_Country.R
ST47-48_MSI_Drivers_Country.R
 
 
ST49-50_MSI_Drivers_age_eo.R
ST49-50_MSI_Drivers_age_eo.R
 
 
ST51-52_MSI_Drivers_Country_No_Lynch.R
ST51-52_MSI_Drivers_Country_No_Lynch.R
 
 
ST53-54_MSI_Drivers_age_eo_No_Lynch.R
ST53-54_MSI_Drivers_age_eo_No_Lynch.R
 
 
Stats_for_Manuscript__Section_Data_Collection.R
Stats_for_Manuscript__Section_Data_Collection.R
 
 

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Scripts used for Díaz-Gay, dos Santos, Moody, et al. 2025 manuscript.

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Readme
BSD-2-Clause license
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Report repository

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