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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 11

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 27 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 712 repositories
  • AllenNeuralDynamics/aind-ophys-oasis-event-detection's past year of commit activity
    Python 0 MIT 0 1 2 Updated Oct 7, 2026
  • AllenNeuralDynamics/aind-ophys-movie-qc's past year of commit activity
    Python 0 MIT 0 0 2 Updated Oct 7, 2026
  • zephyr Public

    A network to predict breathing signals from video

    AllenNeuralDynamics/zephyr's past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 8, 2026
  • brainwasher Public

    0354: control software for automated tissue clearing system

    AllenNeuralDynamics/brainwasher's past year of commit activity
    Python 0 MIT 1 11 5 Updated Oct 7, 2026
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing's past year of commit activity
    Python 27 MIT 13 32 2 Updated Oct 7, 2026
  • AllenNeuralDynamics/openscope_p3_data_release_paper's past year of commit activity
    HTML 2 6 3 1 Updated Oct 7, 2026
  • aind-code-ocean-pipeline-utils Public

    Utilities to for use in code ocean pipelines

    AllenNeuralDynamics/aind-code-ocean-pipeline-utils's past year of commit activity
    Python 0 MIT 0 0 3 Updated Oct 7, 2026
  • aind-smartspim-pipeline-dispatcher Public

    Dispatcher capsule for the SmartSPIM pipeline in Code Ocean.

    AllenNeuralDynamics/aind-smartspim-pipeline-dispatcher's past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 7, 2026
  • aind-smartspim-classification Public

    Code for classifying the cell candidate outputs from aind-smartspim-segmentation within smartspim pipeline

    AllenNeuralDynamics/aind-smartspim-classification's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 7, 2026
  • AllenNeuralDynamics/openscope-params's past year of commit activity
    Python 0 0 0 0 Updated Oct 7, 2026

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