Issues

• wget attempted for s3 input paths

  bug
  Arcadia-Science/noveltree#105 · Filter by author austinhpatton opened on Apr 20, 2026

• Intermediate file compression and/or storage utilization forecasting

  enhancement
  Arcadia-Science/noveltree#103 · Filter by author joaobilro opened on Oct 14, 2024

• Alignment process is failing

  bug
  Arcadia-Science/noveltree#102 · Filter by author mliannholland opened on Sep 10, 2024

• singularity container support

  enhancement
  Arcadia-Science/noveltree#99 · Filter by author mliannholland opened on Mar 19, 2024
  1

• External Species Tree and AleRax

  enhancement
  Arcadia-Science/noveltree#98 · Filter by author agilgom opened on Mar 13, 2024
  1

• Error executing process > 'NOVELTREE:INPUT_CHECK:SAMPLESHEET_CHECK (tsar_downsamp_test_samplesheet.csv)'

  bug
  Arcadia-Science/noveltree#96 · Filter by author bioinfowheat opened on Nov 13, 2023
  1

• Implement AleRax

  enhancement
  Arcadia-Science/noveltree#93 · Filter by author austinhpatton opened on Oct 8, 2023

• Stage fasta files to match samplesheet species names

  enhancement
  Arcadia-Science/noveltree#92 · Filter by author austinhpatton opened on Oct 7, 2023

• Dynamic scaling of compute specifications for GeneRax

  enhancement
  Arcadia-Science/noveltree#90 · Filter by author austinhpatton opened on Oct 4, 2023

• Implement WITCH-NG

  enhancement
  Arcadia-Science/noveltree#89 · Filter by author austinhpatton opened on Oct 4, 2023

• Replace BUSCO with compleasm (as default)

  enhancement
  Arcadia-Science/noveltree#88 · Filter by author austinhpatton opened on Oct 2, 2023

• Build in key workflow output summarization features to wokflow

  enhancement
  Arcadia-Science/noveltree#87 · Filter by author austinhpatton opened on Oct 2, 2023

• resolve use of "none" vs null as parameters

  enhancement
  Arcadia-Science/noveltree#76 · Filter by author austinhpatton opened on Aug 3, 2023

• Not all Uniprot annotations are downloaded...

  bug
  Arcadia-Science/noveltree#74 · Filter by author mezarque opened on Jul 13, 2023

• Subworkflow to look for long-range HGT

  enhancement
  Arcadia-Science/noveltree#73 · Filter by author austinhpatton opened on Apr 27, 2023

• Use GitHub actions to build and publish Docker images

  enhancement
  Arcadia-Science/noveltree#44 · Filter by author mertcelebi opened on Feb 13, 2023

• Update Docker base images and optimize size

  enhancement
  Arcadia-Science/noveltree#43 · Filter by author mertcelebi opened on Feb 13, 2023

• Handling of compressed inputs

  enhancement
  Arcadia-Science/noveltree#26 · Filter by author austinhpatton opened on Jan 3, 2023

• Using subworkflows more to clean-up the mcl_test vs complete separation.

  enhancement
  Arcadia-Science/noveltree#9 · Filter by author mertcelebi opened on Dec 15, 2022

• Validation of input species counts and more meaningful error messages

  enhancement
  Arcadia-Science/noveltree#8 · Filter by author mertcelebi opened on Dec 15, 2022