AMOLF Theory Groups
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- Netherlands
- https://amolf.nl
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Repositories
- ActinRingsMC.jl Public
A Julia simulation package with functions for running adaptive umbrella sampling Monte Carlo simulations of crosslinked actin rings.
- Chemotactic-Receptor-Array-MWC-Ising Public
Jupyter notebooks for modelling E. coli's chemotactic receptors, including variations of both the MWC and the Ising model. Important: the final simulations are in the notebook chemotaxis.ipynb
- Tradeoffs-cellular-prediction Public
Reproduce the figures of 'Trade-offs between cost and information in cellular prediction'
- Synchronous-Replication-Initiation Public
This code simulates the bacterial cell cycle and is used to study the degree of synchrony of replication initiation in the bacterium E. coli.
- actinfrictionpy Public
- actinrings Public
Python package that implements the analytical model from "Constriction of actin rings by passive crosslinker".
- PathWeightSampling-Langevin Public
Path Weight Sampling implementation for Langevin systems in presence of feedback
- filament-sliding Public
A program to simulate the sliding of crosslinked filaments, based on the code of Harmen Wierenga.
- PathWeightSampling.jl Public Forked from manuel-rhdt/PathWeightSampling.jl
Julia implementation of Path Weight Sampling (PWS) to compute information transmission rates
- linear_cell_complex_to_incidence_graph Public Forked from MichaelVennettilli/linear_cell_complex_to_incidence_graph
Some utilities for checking adjacency and incidence and computing the incidence graph.
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