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BUG: Compute Triangle Face Ids accepts Face Labels with the wrong tuple count #1860

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Description

@joeykleingers

Problem

Compute Triangle Face Ids does not check that the Face Labels array has one tuple per triangle of the selected Triangle Geometry. Preflight accepts a Face Labels array with fewer tuples than the geometry has faces. Execute then loops over every face of the geometry, so it reads past the end of the Face Labels array and writes past the end of the created Feature Face Ids array, which the filter sizes from the Face Labels array.

  • Expected: preflight fails with an error that names both counts, as Extract Triple Lines and Write STL Files from Triangle Geometry do for the same kind of mismatch.
  • Actual: preflight passes. Execute reads and writes out of bounds (undefined behavior: wrong output, memory corruption, or a crash).

Occurs at commit 419f9db (develop).

Steps to Reproduce

The verification test below builds this input in memory:

  1. Create a Triangle Geometry with 3 faces and a face Attribute Matrix that holds a valid int32 Face Labels array with 3 tuples and 2 components.
  2. Create a top-level Data Group OtherGroup that holds an int32 array FaceLabels with 2 tuples and 2 components.
  3. Run Compute Triangle Face Ids with Triangle Geometry = the geometry from step 1 and Face Labels = OtherGroup/FaceLabels.
  4. Preflight passes. (Execute would read Face Labels tuple 2 and write Feature Face Ids tuple 2, which do not exist.)

The same input in the GUI (not run; the unit test is the verified reproduction): Read STL File with Generate Triangle Face Labels on, using any STL file with 3 or more triangles; Create Data Group for OtherGroup; Create Data Array with Output Numeric Type = int32, Total Number of Components = 2, Set Tuple Dimensions [not required if creating inside an Attribute Matrix] on and Data Array Dimensions (Slowest to Fastest Dimensions) = 2, Created Array = OtherGroup/FaceLabels; then Compute Triangle Face Ids with that array as Face Labels.

Cause

The Face Labels parameter restricts only the type and the component shape:

params.insert(std::make_unique<ArraySelectionParameter>(k_FaceLabelsArrayPath_Key, "Face Labels", "The DataPath to the FaceLabels values.", DataPath{},
ArraySelectionParameter::AllowedTypes{nx::core::DataType::int32}, ArraySelectionParameter::AllowedComponentShapes{{2}}));

Preflight checks only that the array exists, and then creates the Feature Face Ids array with the tuple shape of the Face Labels array. It never compares that tuple count with the number of faces:

const auto* faceLabelDataArray = dataStructure.getDataAs<Int32Array>(pFaceLabelsArrayPathValue);
if(nullptr == faceLabelDataArray)
{
return IFilter::MakePreflightErrorResult(-12901, fmt::format("Face Labels does not exist at path '{}' or the path does not point to an Int32 Array", pFaceLabelsArrayPathValue.toString()));
}
auto tupleShape = faceLabelDataArray->getTupleShape();
auto faceDataGroupPathVector = pFaceLabelsArrayPathValue.getPathVector();
faceDataGroupPathVector.pop_back();
DataPath faceDataGroupPath = DataPath(faceDataGroupPathVector);
DataPath createdArrayPath = faceDataGroupPath.createChildPath(featureFaceIdsArrayName);
auto createArrayAction = std::make_unique<CreateArrayAction>(nx::core::DataType::int32, faceLabelDataArray->getTupleShape(), std::vector<usize>{1}, createdArrayPath);
resultOutputActions.value().appendAction(std::move(createArrayAction));

    const auto* faceLabelDataArray = dataStructure.getDataAs<Int32Array>(pFaceLabelsArrayPathValue);
    if(nullptr == faceLabelDataArray)
    {
      return IFilter::MakePreflightErrorResult(-12901, ...);
    }
    ...
    auto createArrayAction = std::make_unique<CreateArrayAction>(nx::core::DataType::int32, faceLabelDataArray->getTupleShape(), std::vector<usize>{1}, createdArrayPath);

The algorithm takes the loop count from the geometry, not from the Face Labels array:

const auto& triangleGeom = m_DataStructure.getDataRefAs<TriangleGeom>(m_InputValues->TriangleGeometryPath);
usize totalPoints = triangleGeom.getNumberOfFaces();
const Int32Array& surfaceMeshFaceLabels = m_DataStructure.getDataRefAs<Int32Array>(m_InputValues->FaceLabelsArrayPath);
auto& surfaceMeshFeatureFaceIds = m_DataStructure.getDataRefAs<Int32Array>(m_InputValues->FeatureFaceIdsArrayPath);
std::map<uint64, int32> faceSizeMap;
std::map<uint64, int32> faceIdMap; // This maps a unique 64-bit integer to an increasing 32-bit integer
int32 index = 1;
std::vector<std::pair<int32, int32>> faceLabelVector;
faceLabelVector.emplace_back(0, 0);
// Loop through all the Triangles and figure out how many triangles we have in each one.
for(usize t = 0; t < totalPoints; ++t)
{
uint32 high = 0;
uint32 low = 0;
int32 fl0 = surfaceMeshFaceLabels[t * 2];
int32 fl1 = surfaceMeshFaceLabels[t * 2 + 1];

  usize totalPoints = triangleGeom.getNumberOfFaces();
  ...
  for(usize t = 0; t < totalPoints; ++t)
  {
    ...
    int32 fl0 = surfaceMeshFaceLabels[t * 2];
    int32 fl1 = surfaceMeshFaceLabels[t * 2 + 1];

and writes surfaceMeshFeatureFaceIds[t] for each face (L177, L184). When the Face Labels array has fewer tuples than the geometry has faces, both accesses go past the end of their arrays. The in-memory DataStore does not check the index, so these are unchecked heap reads and writes. The out-of-bounds access is inferred from the code; the test stops at preflight and does not execute it.

Sibling filters reject this mismatch in preflight, for example Extract Triple Lines:

// The selection parameters guarantee these arrays exist with the right type and component shape,
// but not that they are sized to this particular geometry. Executing with a mismatch would read
// past the end of one of them, so check here where the user still gets an actionable message.
if(faceLabels.getNumberOfTuples() != triangleGeom.getNumberOfFaces())
{
return {MakeErrorResult<OutputActions>(-57402, fmt::format("Face Labels array '{}' has {} tuples but Triangle Geometry '{}' has {} faces. They must match.", pFaceLabelsArrayPath.toString(),
faceLabels.getNumberOfTuples(), pTriangleGeometryPath.toString(), triangleGeom.getNumberOfFaces()))};
}

and Write STL Files from Triangle Geometry:

else if(featureIds->getNumberOfTuples() != triangleGeom->getNumberOfFaces())
{
return MakePreflightErrorResult(-27888, fmt::format("Array '{}' has {} tuples but Triangle Geometry '{}' has {} faces; it must have one tuple per face.", pFeatureIdsPathValue.toString(),
featureIds->getNumberOfTuples(), pTriangleGeomPathValue.toString(), triangleGeom->getNumberOfFaces()));
}

Verification Unit Test

Add to src/Plugins/SimplnxCore/test/SharedFeatureFaceTest.cpp (after the existing test case; it uses the constants in the file's SharedFeatureFaceFilterTest namespace):

TEST_CASE("SimplnxCore::SharedFeatureFaceFilter: Face Labels tuple count must match the triangle count", "[SimplnxCore][SharedFeatureFaceFilter]")
{
  UnitTest::LoadPlugins();

  // A valid Triangle Geometry with 5 vertices and 3 faces, and a matching 3-tuple Face Labels array
  DataStructure dataStructure;
  auto* triangleGeomPtr = TriangleGeom::Create(dataStructure, k_TriangleGeometryName);
  REQUIRE(triangleGeomPtr != nullptr);

  const std::vector<float32> vertices = {0.0F, 0.0F, 0.0F, 1.0F, 0.0F, 0.0F, 0.0F, 1.0F, 0.0F, 1.0F, 1.0F, 0.0F, 2.0F, 0.0F, 0.0F};
  const std::vector<IGeometry::MeshIndexType> faces = {0, 1, 2, 1, 3, 2, 1, 4, 3};
  const usize numVertices = vertices.size() / 3;
  const usize numFaces = faces.size() / 3;

  auto* vertexAttrMatPtr = AttributeMatrix::Create(dataStructure, INodeGeometry0D::k_VertexAttributeMatrixName, {numVertices}, triangleGeomPtr->getId());
  REQUIRE(vertexAttrMatPtr != nullptr);
  triangleGeomPtr->setVertexAttributeMatrix(*vertexAttrMatPtr);
  auto* faceAttrMatPtr = AttributeMatrix::Create(dataStructure, k_FaceAttributeMatrixName, {numFaces}, triangleGeomPtr->getId());
  REQUIRE(faceAttrMatPtr != nullptr);
  triangleGeomPtr->setFaceAttributeMatrix(*faceAttrMatPtr);

  auto* vertexListPtr = IGeometry::SharedVertexList::Create(dataStructure, "SharedVertexList", std::make_unique<DataStore<float32>>(std::vector<usize>{numVertices}, std::vector<usize>{3}, 0.0F),
                                                            triangleGeomPtr->getId());
  REQUIRE(vertexListPtr != nullptr);
  auto* faceListPtr = IGeometry::SharedFaceList::Create(dataStructure, "SharedTriList", std::make_unique<DataStore<IGeometry::MeshIndexType>>(std::vector<usize>{numFaces}, std::vector<usize>{3}, 0),
                                                        triangleGeomPtr->getId());
  REQUIRE(faceListPtr != nullptr);
  auto& vertexListRef = vertexListPtr->getDataStoreRef();
  for(usize index = 0; index < vertices.size(); index++)
  {
    vertexListRef[index] = vertices[index];
  }
  auto& faceListRef = faceListPtr->getDataStoreRef();
  for(usize index = 0; index < faces.size(); index++)
  {
    faceListRef[index] = faces[index];
  }
  triangleGeomPtr->setVertices(*vertexListPtr);
  triangleGeomPtr->setFaceList(*faceListPtr);

  auto* faceLabelsPtr = Int32Array::Create(dataStructure, k_FaceLabelsName, std::make_unique<DataStore<int32>>(std::vector<usize>{numFaces}, std::vector<usize>{2}, 0), faceAttrMatPtr->getId());
  REQUIRE(faceLabelsPtr != nullptr);
  const std::vector<int32> faceLabels = {1, 2, 1, 2, 2, 3};
  auto& faceLabelsRef = faceLabelsPtr->getDataStoreRef();
  for(usize index = 0; index < faceLabels.size(); index++)
  {
    faceLabelsRef[index] = faceLabels[index];
  }

  // A valid int32 array with 2 components but only 2 tuples, in a group outside the geometry
  const DataPath otherGroupPath({"OtherGroup"});
  const DataPath shortFaceLabelsPath = otherGroupPath.createChildPath(k_FaceLabelsName);
  auto* otherGroupPtr = DataGroup::Create(dataStructure, otherGroupPath.getTargetName());
  REQUIRE(otherGroupPtr != nullptr);
  auto* shortFaceLabelsPtr =
      Int32Array::Create(dataStructure, k_FaceLabelsName, std::make_unique<DataStore<int32>>(std::vector<usize>{numFaces - 1}, std::vector<usize>{2}, 1), otherGroupPtr->getId());
  REQUIRE(shortFaceLabelsPtr != nullptr);

  SharedFeatureFaceFilter filter;
  Arguments args;
  args.insertOrAssign(SharedFeatureFaceFilter::k_RandomizeFeatures_Key, std::make_any<bool>(false));
  args.insertOrAssign(SharedFeatureFaceFilter::k_TriGeometryDataPath_Key, std::make_any<GeometrySelectionParameter::ValueType>(k_GeometryPath));
  args.insertOrAssign(SharedFeatureFaceFilter::k_FeatureFaceIdsArrayName_Key, std::make_any<DataObjectNameParameter::ValueType>(k_FeatureFaceIdsArrayName));
  args.insertOrAssign(SharedFeatureFaceFilter::k_GrainBoundaryAttributeMatrixName_Key, std::make_any<DataObjectNameParameter::ValueType>(k_GrainBoundaryAttributeMatrixName));
  args.insertOrAssign(SharedFeatureFaceFilter::k_FeatureNumTrianglesArrayName_Key, std::make_any<DataObjectNameParameter::ValueType>(k_FeatureNumTrianglesArrayName));
  args.insertOrAssign(SharedFeatureFaceFilter::k_FeatureFaceLabelsArrayName_Key, std::make_any<DataObjectNameParameter::ValueType>(k_FeatureFaceLabelsArrayName));

  // Control: the matching Face Labels array passes preflight
  args.insertOrAssign(SharedFeatureFaceFilter::k_FaceLabelsArrayPath_Key, std::make_any<DataPath>(k_FaceLabelsPath));
  auto validPreflightResult = filter.preflight(dataStructure, args);
  SIMPLNX_RESULT_REQUIRE_VALID(validPreflightResult.outputActions);

  // 2 Face Labels tuples for 3 triangles must be rejected before execute reads past the array
  args.insertOrAssign(SharedFeatureFaceFilter::k_FaceLabelsArrayPath_Key, std::make_any<DataPath>(shortFaceLabelsPath));
  auto preflightResult = filter.preflight(dataStructure, args);
  SIMPLNX_RESULT_REQUIRE_INVALID(preflightResult.outputActions);
}

Run only this test from the build directory:

ctest -R "SharedFeatureFaceFilter: Face Labels tuple count" --output-on-failure

Failure at commit 419f9db (the control preflight passes, the mismatched preflight is accepted):

src/Plugins/SimplnxCore/test/SharedFeatureFaceTest.cpp:182: FAILED:
  REQUIRE( simplnxCheckedResult.invalid() )
with expansion:
  false

test cases:  1 |  0 passed | 1 failed
assertions: 11 | 10 passed | 1 failed

Proposed Fix

In SharedFeatureFaceFilter::preflightImpl() (src/Plugins/SimplnxCore/src/SimplnxCore/Filters/SharedFeatureFaceFilter.cpp), get the Triangle Geometry and return an error when the Face Labels tuple count is not the face count, before the output actions are created:

+  const auto* triangleGeom = dataStructure.getDataAs<TriangleGeom>(triangleGeometryPath);
+  if(nullptr == triangleGeom)
+  {
+    return IFilter::MakePreflightErrorResult(-12902, fmt::format("Triangle Geometry does not exist at path '{}'", triangleGeometryPath.toString()));
+  }
+
   // Create the Face Data/FeatureIds Array
   {
     const auto* faceLabelDataArray = dataStructure.getDataAs<Int32Array>(pFaceLabelsArrayPathValue);
     if(nullptr == faceLabelDataArray)
     {
       return IFilter::MakePreflightErrorResult(-12901, ...);
     }
+    if(faceLabelDataArray->getNumberOfTuples() != triangleGeom->getNumberOfFaces())
+    {
+      return IFilter::MakePreflightErrorResult(-12903, fmt::format("Face Labels array '{}' has {} tuples but Triangle Geometry '{}' has {} faces. They must match.", pFaceLabelsArrayPathValue.toString(),
+                                                                   faceLabelDataArray->getNumberOfTuples(), triangleGeometryPath.toString(), triangleGeom->getNumberOfFaces()));
+    }

The filter needs #include "simplnx/DataStructure/Geometry/TriangleGeom.hpp". The error codes are suggestions; -12901 is the only code the filter uses now. After the fix, the test can also check the new error code. The algorithm can then rely on the two counts being equal.

Notes

Activity

  1. imikejackson commented on Oct 21, 2026

    @imikejackson
    Contributor

    @joeykleingers This is either being fixed in a current PR or has aready been fixed in a merge. I distinctly remember fixing this somewhere.

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