Feature Request
Problem / Motivation
Including metadata extraction in aiida tools requires for biosim-extractor to fetch the schema. Currently, local schema file paths are used for extraction, or fetched from GH online. Instead, making the schema a dependent package will allow for the extractor to use the schema without having to fetch it online.
Proposed Solution
Add the schema as an installable package on PyPI/conda, to be used by biosim-extractor.
Expected Impact
- Easier incorporation of metadata extraction into aiida tools will unify all BioSimDR tools with the schema.
Additional Context
- Fetching online would not be feasible for aiida tools, as there may not be internet access when using these tools in clusters.
- The biosimdb-interface fetches the latest GH version of the repo when building the docker container, could possibly remove this in the future as the schema will be installed with the extractor, just need to make sure the latest version of the schema is set as a dependency for the extractor.
Feature Request
Problem / Motivation
Including metadata extraction in aiida tools requires for biosim-extractor to fetch the schema. Currently, local schema file paths are used for extraction, or fetched from GH online. Instead, making the schema a dependent package will allow for the extractor to use the schema without having to fetch it online.
Proposed Solution
Add the schema as an installable package on PyPI/conda, to be used by biosim-extractor.
Expected Impact
Additional Context