Update GitHub Actions

.github/workflows/biosimdb_interface_project-ci.yaml

@@ -18,7 +18,7 @@ jobs:
         python-version: ["3.12", "3.13", "3.14"]
     steps:
       - name: Checkout repo
-        uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6
+        uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6.1.0
 
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
@@ -82,7 +82,7 @@ jobs:
     runs-on: ubuntu-latest
     timeout-minutes: 15
     steps:
-      - uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6
+      - uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6.1.0
       - name: Set up Python 3.14
         uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
         with:
@@ -98,7 +98,7 @@ jobs:
     runs-on: ubuntu-24.04
     timeout-minutes: 15
     steps:
-      - uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6
+      - uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6.1.0
       - name: Set up Python 3.14
         uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
         with:

.github/workflows/docker-publish.yaml

@@ -18,13 +18,13 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - name: Set up QEMU
-        uses: docker/setup-qemu-action@c7c53464625b32c7a7e944ae62b3e17d2b600130 # v3
+        uses: docker/setup-qemu-action@c7c53464625b32c7a7e944ae62b3e17d2b600130 # v3.7.0
 
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@8d2750c68a42422c14e847fe6c8ac0403b4cbd6f # v3
+        uses: docker/setup-buildx-action@8d2750c68a42422c14e847fe6c8ac0403b4cbd6f # v3.12.0
 
       - name: Fetch interface, schema and extractor versions and build date
         id: vars
@@ -38,15 +38,15 @@ jobs:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 
       - name: Log in to the Container registry
-        uses: docker/login-action@c94ce9fb468520275223c153574b00df6fe4bcc9 # v3
+        uses: docker/login-action@c94ce9fb468520275223c153574b00df6fe4bcc9 # v3.7.0
         with:
           registry: ${{ env.REGISTRY }}
           username: ${{ github.repository_owner }}
           password: ${{ secrets.BUILD_TOKEN }}
 
       - name: Extract metadata (tags, labels) for Docker
         id: meta
-        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # v5.10.0
         with:
           images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
           tags: |
@@ -60,7 +60,7 @@ jobs:
             biosim.extractor.version=${{ steps.vars.outputs.extractor }}
 
       - name: Build and push Docker image
-        uses: docker/build-push-action@10e90e3645eae34f1e60eeb005ba3a3d33f178e8 # v6
+        uses: docker/build-push-action@10e90e3645eae34f1e60eeb005ba3a3d33f178e8 # v6.19.2
         with:
           context: .
           file: ./docker/Dockerfile

.github/workflows/release.yaml

@@ -18,15 +18,15 @@ jobs:
     steps:
     - name: Checkout repository
       id: repo
-      uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6
+      uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6.1.0
 
     - name: Set up Python
       uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
       with:
         python-version: 3.14.7
 
     - name: Checkout repository (full history and tags)
-      uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6
+      uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6.1.0
       with:
         fetch-depth: 0
 
@@ -62,7 +62,7 @@ jobs:
     steps:
 
       - name: checkout
-        uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6
+        uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6.1.0
 
       - name: Change version in repo (init) and CITATION.cff
         run: |
@@ -82,7 +82,7 @@ jobs:
 
       - name: send PR
         id: pr_id
-        uses: peter-evans/create-pull-request@98357b18bf14b5342f975ff684046ec3b2a07725 # v8.0.0
+        uses: peter-evans/create-pull-request@5f6978faf089d4d20b00c7766989d076bb2fc7f1 # v8.1.1
         with:
           commit-message: Update version to ${{ github.event.inputs.version }}
           branch: version-update
@@ -117,7 +117,7 @@ jobs:
     runs-on: ubuntu-24.04
     steps:
       - name: Checkout repository
-        uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6
+        uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6.1.0
         with:
           ref: main
 
@@ -136,7 +136,7 @@ jobs:
 
       - name: create release
         id: create_release
-        uses: softprops/action-gh-release@3d0d9888cb7fd7b750713d6e236d1fcb99157228 # v3.0.2
+        uses: softprops/action-gh-release@efb35369e0ad2afab669f228072c1b0d510eae64 # v3.0.3
         with:
           name: v${{ github.event.inputs.version }}
           generate_release_notes: true

.github/workflows/update-copyright-years-in-license-file.yaml

@@ -9,9 +9,9 @@ jobs:
     update-license-year:
         runs-on: ubuntu-latest
         steps:
-            - uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6
+            - uses: actions/checkout@d23441a48e516b6c34aea4fa41551a30e30af803 # v6.1.0
               with:
                   fetch-depth: 0
-            - uses: FantasticFiasco/action-update-license-year@f180e962fa988db222d8f03ef4636750312d1b3d # v3
+            - uses: FantasticFiasco/action-update-license-year@f180e962fa988db222d8f03ef4636750312d1b3d # v3.0.4
               with:
                   token: ${{ secrets.GITHUB_TOKEN }}