Dependency Dashboard

[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
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Abandoned Dependencies

The following dependencies have not received updates for an extended period and may be unmaintained.

Note

Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.

View abandoned dependencies (5)

Datasource	Package	Last Updated
regex	alphashape	2021-04-16
regex	click-log	2022-03-13
regex	iprogress	2019-12-29
regex	rtree	2025-08-13
regex	vermouth	2025-09-08

Pending Status Checks

The following updates await pending status checks. To force their creation now, click on a checkbox below.

• Update ghcr.io/ccpbiosim/jupyterhub-base:latest Docker digest to 2cdbd3f
• Update dependency ubuntu to v26

Detected Dependencies

dockerfile (1)

docker/Dockerfile (1)

• ghcr.io/ccpbiosim/jupyterhub-base latest@sha256:5eb67b09e3fdf64b3128bd9501e08a0cbb007804b678f2096728d8c1260e6217 → [Updates: latest]

github-actions (1)

.github/workflows/build.yaml (13)

• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• docker/metadata-action v6.2.0@dc802804100637a589fabce1cb79ff13a1411302
• docker/setup-buildx-action v4.4.1@f87e5991a6d7451dcb8d9637bfbc97413f497069
• docker/build-push-action v7.4.0@c3c9e263c25d99ce0380d002d59b67737d91b0dc
• docker/login-action v4.6.0@dbcb813823bdd20940b903addbd779551569679f
• docker/build-push-action v7.4.0@c3c9e263c25d99ce0380d002d59b67737d91b0dc
• actions/upload-artifact v7.0.1@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
• actions/download-artifact v8.0.1@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c
• docker/login-action v4.6.0@dbcb813823bdd20940b903addbd779551569679f
• docker/setup-buildx-action v4.4.1@f87e5991a6d7451dcb8d9637bfbc97413f497069
• docker/metadata-action v6.2.0@dc802804100637a589fabce1cb79ff13a1411302
• peter-evans/repository-dispatch v4.0.1@28959ce8df70de7be546dd1250a005dd32156697
• ubuntu 24.04 → [Updates: 26.04]

regex (2)

docker/Dockerfile (9)

• alphashape 1.3.1
• click 8.5.0
• click-log 0.4.0
• coby 1.0.15
• pbr 7.0.3
• rtree 1.4.1
• shapely 2.1.2
• trimesh 5.1.0
• vermouth 0.15.0

docker/Dockerfile (9)

• matplotlib 3.11.2
• mdanalysis 2.10.0
• numpy 2.5.3
• scikit-learn 1.9.1
• tqdm 4.70.1
• mdtraj 1.11.1
• iprogress 0.4
• ipywidgets 8.1.9
• gromacs 2026.3

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