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resolve clone source/target against the list their indices came from - #172
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10 warnings and 1 notice
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Build and test:
beast-base/src/main/java/beast/base/evolution/likelihood/TreeLikelihood.java#L65
beast.base.evolution.substitutionmodel.Frequencies in beast.base.evolution.substitutionmodel has been deprecated and marked for removal
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Build and test:
beast-base/src/main/java/beast/base/CudaDetector.java#L38
beast.base.evolution.sitemodel.SiteModel in beast.base.evolution.sitemodel has been deprecated and marked for removal
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Build and test:
beast-base/src/main/java/beast/base/CudaDetector.java#L38
beast.base.evolution.sitemodel.SiteModel in beast.base.evolution.sitemodel has been deprecated and marked for removal
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Build and test:
beast-base/src/main/java/module-info.java#L228
beast.base.inference.operator.kernel.BactrianDeltaExchangeOperator in beast.base.inference.operator.kernel has been deprecated and marked for removal
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Build and test:
beast-base/src/main/java/module-info.java#L169
beast.base.evolution.substitutionmodel.Frequencies in beast.base.evolution.substitutionmodel has been deprecated and marked for removal
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Build and test:
beast-base/src/main/java/module-info.java#L151
beast.base.evolution.sitemodel.SiteModel in beast.base.evolution.sitemodel has been deprecated and marked for removal
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Build and test
invalid input: '<'
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Build and test
invalid input: '<'
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Build and test
invalid input: '<'
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Build and test:
beast-pkgmgmt/src/main/java/beast/pkgmgmt/PackageManager.java#L1352
addURL(java.net.URL,java.lang.String,java.util.Map<java.lang.String,java.util.Set<java.lang.String>>) in beast.pkgmgmt.BEASTClassLoader has been deprecated and marked for removal
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"The ubuntu-latest label will migrate to Ubuntu 26 beginning October 19, 2026. For more information, see https://github.com/actions/runner-images/issues/14748"
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