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contract_model follows RAVEN's contractModel and takes dist_reverse, the distReverse option. The name remove_duplicate_reactions is removed.
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manipulation.contract_modelis the new name ofremove_duplicate_reactions, after RAVEN'scontractModel, and the old name is removed.contract_modeltakesdist_reverse(defaultTrue), thedistReverseoption ofcontractModel: withFalse, reactions with the same metabolites and a different reversibility are duplicates.simplify_modelandreplace_metabolitecallcontract_model.The parity ledger of raven-gecko-parity and the curated name pairs of raven-docs follow in their own pull requests.