Add navigable study map to the current manuscript

[CompleteDotTech]

The cumulative current manuscript opens with 16 study sections but had no study map or working heading targets in its rendered HTML/PDF. Readers could not move directly from a study summary to its protocol and evidence boundary.

This adds a generated study directory with evidence type, result limit, date, and scoped links to each study and protocol. The renderer assigns stable heading anchors to HTML/PDF and keeps the directory current after report regeneration. The adaptive report preserves the map, and the multicall workflow renders it before checking the rebuilt manuscript. Archived research sections and numerical results are unchanged.

Validation:

• Full offline multicall-to-post-certificate report regeneration followed by current manuscript rendering completed.
• 10 focused navigation/layout tests passed, including duplicate protocol headings and link scoping.
• All 32 study/protocol fragments matched the live GitHub heading metadata; HTML anchors and PDF named destinations were checked.
• Original 161-file archive verification and frontier paper-binding verification passed.
• Build receipt hashes match the committed Markdown, renderer, and PDF.

Related: #36.

Fixes #38

[chatgpt-codex-connector]

Codex Review Summary

This comment shows the latest Codex review activity on this pull request.

Review	Status	Commit	Review trigger
📝 Code Review	✅ Completed 2026-09-28T18:36:33.356120Z	8d57f63	Draft marked ready
🔒 Security Review	✅ Completed 2026-09-28T18:37:38.158229Z	8d57f63	Draft marked ready

ℹ️ About Codex in GitHub

Your team has set up Codex to review pull requests in this repo. Reviews are triggered when you

• Open a pull request for review
• Mark a draft as ready
• Comment "@codex review" or "@codex security review".

Codex reacts with 👀 while any review is running, comments if it has suggestions, and reacts with 👍 once all reviews finish with no findings.