Issues

• Add PJM backend support

  ENCODE-DCC/caper#210 · Filter by author MinamiNaoya opened on Apr 10, 2025

• Unable to run ChIP-seq pipeline Docker container on HPC with Slurm (Error: "caper not found")

  ENCODE-DCC/caper#209 · Filter by author eusoler opened on Apr 4, 2025

• Update caper for compatibility with Python 3.12+

  ENCODE-DCC/caper#207 · Filter by author mihirsamdarshi opened on Mar 28, 2025

• caper installs tests into site-packages/tests which is too generic of a name

  ENCODE-DCC/caper#206 · Filter by author detrout opened on Oct 29, 2024

• Compatibility Update for Caper with Google Batch Following Deprecation of Cloud Life Sciences

  ENCODE-DCC/caper#205 · Filter by author TarjinderSingh opened on May 5, 2024

• using slurm-extra-param and the leader job

  ENCODE-DCC/caper#204 · Filter by author giardine opened on Apr 5, 2024

• Setting $SINGULARITY_TMPDIR environment variable

  ENCODE-DCC/caper#203 · Filter by author miller-alexander opened on Dec 11, 2023

• --slurm-extra-param: expected one argument

  ENCODE-DCC/caper#202 · Filter by author OrangeyO2 opened on Dec 6, 2023
  1

• Caper conda forge

  ENCODE-DCC/caper#200 · Filter by author atb1r21 opened on Aug 18, 2023

• Cannot run on lsf system, not sure if exit code 127 is the reason

  ENCODE-DCC/caper#196 · Filter by author Jixuan-Huang opened on Jul 12, 2023
  6

• caper halted

  ENCODE-DCC/caper#195 · Filter by author zji90 opened on Jun 28, 2023

• LSF job parameter error

  ENCODE-DCC/caper#192 · Filter by author jwtobias opened on Apr 6, 2023
  3

• apptainer

  ENCODE-DCC/caper#191 · Filter by author ad2n15 opened on Mar 17, 2023
  1

• Normalization

  ENCODE-DCC/caper#187 · Filter by author nicholas-moskwa opened on Oct 28, 2022

• Relative paths to data files are not accessible by Singularity containers

  ENCODE-DCC/caper#184 · Filter by author jgoodson opened on Oct 3, 2022
  4

• cromwell works, caper doesn't

  ENCODE-DCC/caper#182 · Filter by author mapostolides opened on Jul 25, 2022

• caper init slurm not working

  ENCODE-DCC/caper#175 · Filter by author mapostolides opened on Jul 14, 2022
  6

• idr threshold

  ENCODE-DCC/caper#167 · Filter by author shinlin77 opened on Apr 9, 2022
  1

• getting Cromwell error

  ENCODE-DCC/caper#161 · Filter by author shinlin77 opened on Mar 26, 2022
  1

• Setting up MYSQL Metadata database - Unable connect to local MySQL server through socket

  ENCODE-DCC/caper#146 · Filter by author sfpacman opened on Oct 14, 2021
  1

• Can GCP backend use Genomics API?

  ENCODE-DCC/caper#141 · Filter by author yihming opened on Aug 26, 2021

• ~/.caper/default.conf file isn't created after caper init

  ENCODE-DCC/caper#130 · Filter by author XinmiaoYan opened on Jun 23, 2021
  1

• Womtool validation doesn't raise an exception

  ENCODE-DCC/caper#124 · Filter by author Bek opened on May 19, 2021
  1

• PBS qsub Node Specification Error

  ENCODE-DCC/caper#118 · Filter by author CriticalSci opened on May 13, 2021
  4

• how to easily find metadata.json file after run

  ENCODE-DCC/caper#105 · Filter by author dfeinzeig opened on Dec 9, 2020
  1