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docs(agents): restructure AGENTS.md and add CODING_STANDARDS.md - #91

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m-murphy wants to merge 24 commits into

refactor/specimen-registrationfrom

docs/agents-md-restructure

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docs(agents): restructure AGENTS.md and add CODING_STANDARDS.md#91
m-murphy wants to merge 24 commits into
refactor/specimen-registrationfrom
docs/agents-md-restructure

Commits on Oct 6, 2026
- docs(agents): drop no-ops from AGENTS.md and start CODING_STANDARDS.md.
  
  m-murphy
  and
  claude
  committed
  6662a62
- docs: move test and database rules into CODING_STANDARDS.md.
  
  m-murphy
  and
  claude
  committed
  3efb494
- docs(agents): turn AGENTS.md into a router and fold docs/agents into it.
  
  m-murphy
  and
  claude
  committed
  bf1cbda
- docs: hold the ADR-derived rules back for their own review.
  
  m-murphy
  and
  claude
  committed
  d4a8e9a
- docs: cite ADRs as "ADR 0006" in the files this PR touches.
  
  m-murphy
  and
  claude
  committed
  dd642a4
- docs: write the coding standards as second-person imperatives.
  
  m-murphy
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  claude
  committed
  bfa8d40
- docs: allow read-only tools that must not migrate to skip openOperationalDatabase.
  
  m-murphy
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  claude
  committed
  bf9746b
- docs: say when the hand-rolled session helpers are acceptable.
  
  m-murphy
  and
  claude
  committed
  d2797d8
- docs: put the reason for withWriteTransaction back next to the rule.
  
  m-murphy
  and
  claude
  committed
  08e081c
- docs: restore the test rules the README rewrite dropped.
  
  m-murphy
  and
  claude
  committed
  85cb068
- docs: keep the whole-*Api override rule in CODING_STANDARDS.md only.
  
  m-murphy
  and
  claude
  committed
  acb19ec
- docs: describe the pre-commit hook and ci:verify in README.md only.
  
  m-murphy
  and
  claude
  committed
  8e96e89
- docs: name the five triage labels in AGENTS.md.
  
  m-murphy
  and
  claude
  committed
  be5a547
- docs: rename the AGENTS.md "Checks" heading so it isn't confused with the Checks workflow.
  
  m-murphy
  and
  claude
  committed
  35f4f1d
- docs: say what CODING_STANDARDS.md holds in the AGENTS.md pointer.
  
  m-murphy
  and
  claude
  committed
  c0f3e55
- docs: give AGENTS.md an H1 heading, as CODING_STANDARDS.md has.
  
  m-murphy
  and
  claude
  committed
  063c188
- docs: make the root README the one place for coverage targets.
  
  m-murphy
  and
  claude
  committed
  af31451
- docs: restore the CURRENT_SCHEMA_VERSION bullet in the db README.
  
  m-murphy
  and
  claude
  committed
  d40df05
Commits on Oct 7, 2026
- Merge branch 'refactor/specimen-registration' into docs/agents-md-restructure
  m-murphy
  committed
  1a1ea59
Commits on Oct 30, 2026

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docs(agents): restructure AGENTS.md and add CODING_STANDARDS.md - #91

docs(agents): restructure AGENTS.md and add CODING_STANDARDS.md#91
m-murphy wants to merge 24 commits into
refactor/specimen-registrationfrom
docs/agents-md-restructure

Commits on Oct 6, 2026

docs(agents): drop no-ops from AGENTS.md and start CODING_STANDARDS.md.

docs: move test and database rules into CODING_STANDARDS.md.

docs(agents): turn AGENTS.md into a router and fold docs/agents into it.

docs: hold the ADR-derived rules back for their own review.

docs: cite ADRs as "ADR 0006" in the files this PR touches.

docs: write the coding standards as second-person imperatives.

docs: allow read-only tools that must not migrate to skip openOperationalDatabase.

docs: say when the hand-rolled session helpers are acceptable.

docs: put the reason for withWriteTransaction back next to the rule.

docs: restore the test rules the README rewrite dropped.

docs: keep the whole-*Api override rule in CODING_STANDARDS.md only.

docs: describe the pre-commit hook and ci:verify in README.md only.

docs: name the five triage labels in AGENTS.md.

docs: rename the AGENTS.md "Checks" heading so it isn't confused with the Checks workflow.

docs: say what CODING_STANDARDS.md holds in the AGENTS.md pointer.

docs: give AGENTS.md an H1 heading, as CODING_STANDARDS.md has.

docs: make the root README the one place for coverage targets.

docs: restore the CURRENT_SCHEMA_VERSION bullet in the db README.

Commits on Oct 7, 2026

Merge branch 'refactor/specimen-registration' into docs/agents-md-restructure

Commits on Oct 30, 2026

docs(standards): say which code may run DDL, and scope the web test rules to new and changed tests.

docs(agents): give the API and contract test commands, setup:hooks, and a durable lint note.

docs(tests): make the README test snippets compile and follow the query rule.

Merge branch 'refactor/specimen-registration' into docs/agents-md-restructure

Merge branch 'refactor/specimen-registration' into docs/agents-md-restructure