Refactoring + who icd 10 support - #11

Merged

caherzee merged 39 commits into

Mar 26, 2026

Commits on Oct 17, 2025

Added support for who ICD10 codes.
caherzee
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caf42a6
Split into two mains:
caherzee
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439772d
Updated readme
caherzee
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2858a81

Commits on Oct 20, 2025

Remove TriNetX specific filters from generic main
caherzee
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2addcaf

Commits on Oct 21, 2025

Refactoring to seperate CLI APIs from general ICD10 parsing code. Split
caherzee
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fc50908
Make event of interest a CLI option
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9df648b
Added patient filters for age <65 and age >65
caherzee
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3642ed2

Commits on Oct 22, 2025

Changed inteface for patient filters.
caherzee
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93c699d

Commits on Oct 24, 2025

Added generic trajectory filters.
caherzee
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4f84f13

Commits on Oct 29, 2025

Support for ACT codes
caherzee
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a45fd01
Simplified data interface: removed unused TrinetX fields from
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1cbe1f8

Commits on Nov 3, 2025

Updated control output.
caherzee
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39d9245

Commits on Nov 4, 2025

adding DOT graph generation
vanmeerb
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09e7b4c
adding cluster-nr to nodes in dot
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7dd2749
going multiline for node labels in dot
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1765dfe
going multiline for node labels in dot
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796e618
nicer colors, no more magenta
vanmeerb
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d663917
Merge pull request #8 from ExaScience/feat/dot
caherzee
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d4e3da2

Commits on Nov 7, 2025

re-do of structured log printing on stdout
vanmeerb
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85421be
updated
vanmeerb
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0de99f2
adding compile workflow
vanmeerb
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b86c287
adding compile workflow
vanmeerb
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22d5e0d

Commits on Nov 10, 2025

adding more slog calls
vanmeerb
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0ac034a
adding more slog calls
vanmeerb
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400bf87

Commits on Nov 11, 2025

slog updates after initial test
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3d46838

Commits on Nov 12, 2025

slog in clustering
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144cf8f
adding go test
vanmeerb
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5281a76

Commits on Nov 17, 2025

Updated readme
caherzee
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0c32e66
Updated readme with documentation for --loglvl option.
caherzee
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c8d3a60
Structured logging. Merge pull request #9 from ExaScience/feat/slogs
caherzee
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99d99b9

Commits on Nov 19, 2025

Switched to structured output + updated readme
caherzee
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a9b4b2c
Fix readme
caherzee
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902758c

Commits on Dec 17, 2025

Added dot output for cluster annotated with patient numbers
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8b2126c

Commits on Dec 24, 2025

Added code for calculating the extended modularity score of the
caherzee
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d69238f

Commits on Jan 5, 2026

Integrated code for calculating extended modularity score with main.
caherzee
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f8c3157

Commits on Jan 6, 2026

Refactor: rename to empirical probability
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3ecea59
Updated readme with extended modularity metric for comparing
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5a33111

Commits on Jan 28, 2026

Fix readme
caherzee
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9844dc6

Commits on Mar 26, 2026

Add test data (fake).
caherzee
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ca1b0b2