[Thomas-Rowlands]

♻️ Refactor

PR Description

Swapped the image from Minio to RustFS and made it an S3 configurable string, along with required parameters such as credentials.

Related Issues or other material

Related #
Closes #208

Screenshots, example outputs/behaviour etc.

✅ Added/updated tests?

• [] This PR contains relevant tests / Or doesn't need to per the below explanation
  Existing tests used.

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[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
carrottransform
__init__.py	20	15	25%	16–17, 20, 22, 25, 28–30, 33–37, 39, 41
_version.py	5	2	60%	5–6
carrottransform/cli
__init__.py	0	0	100%
carrottransform/cli/subcommands
__init__.py	0	0	100%
run.py	159	17	89%	92–93, 105–107, 132, 165–167, 291, 299, 334–337, 383, 393
run_v2.py	20	4	80%	55, 57–59
carrottransform/tools
__init__.py	4	0	100%
args.py	146	28	81%	96–97, 106–109, 133, 150, 154, 163, 168, 178, 181, 186, 197–199, 206, 212, 214, 222, 230, 260, 273, 283, 288, 331, 335
at_path.py	8	0	100%
concept_helpers.py	21	1	95%	27
core.py	69	2	97%	118, 126
date_helpers.py	45	5	89%	24–25, 28, 65, 70
db.py	21	0	100%
file_helpers.py	53	27	49%	18–20, 35, 37–41, 50–52, 57–61, 76, 78–80, 83–85, 87, 91, 96
logger.py	12	0	100%
mapping_types.py	20	0	100%
mappingrules.py	238	5	98%	120, 377, 380–382
metrics.py	139	46	67%	129–134, 136, 143–156, 159, 168, 174–179, 262, 264–270, 286–288, 291, 298, 300, 303, 349–350
omopcdm.py	153	13	92%	45–47, 131, 155, 160, 172–175, 181, 199, 205
orchestrator.py	175	10	94%	87–88, 98, 101, 118–120, 205, 370, 372
outputs.py	176	63	64%	50, 73, 125, 151–152, 169–171, 174–177, 180–183, 186, 189–190, 192–196, 198, 201, 204, 207, 211–212, 215, 217, 219, 221–222, 225–227, 230–232, 241–242, 251–253, 267, 281, 283, 290, 292–295, 297, 309–310, 315–316, 318–320, 331
person_helpers.py	87	23	74%	17–18, 20–21, 23–24, 85, 98, 102, 133–134, 147, 160–163, 166–168, 170–171, 174–175
record_builder.py	182	22	88%	26, 56, 71, 76, 79, 88, 100, 108–109, 183, 210, 259, 300–301, 315, 323, 327, 341, 348, 365, 392–393
sources.py	155	52	66%	27, 47, 50–51, 54, 64, 114–115, 184–188, 190–191, 193–194, 196, 199–200, 203–205, 207–212, 214, 218–220, 222, 228, 230–231, 233–234, 236, 239–240, 243–245, 247–252, 254
stream_helpers.py	34	0	100%
types.py	64	0	100%
validation.py	30	1	97%	51
TOTAL	2036	336	83%

Tests	Skipped	Failures	Errors	Time
87	1 💤	0 ❌	0 🔥	16.226s ⏱️