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  1. Kmernator Kmernator Public

    An MPI Toolkit for large-scale genomic analysis

    C++ 16 3

  2. biopig biopig Public archive

    Java 9 5

  3. axolotl axolotl Public

    Axolotl is a Python library for scalable genome analysis, addressing the gap in tools for handling the rapid growth of genomic data with easy parallel processing.

    Python 5 1

  4. albacore albacore Public

    Forked from dvera/albacore

    Dockerfile for the Albacore basecaller from Oxford Nanopore

    3

  5. OxfordNanoporeData OxfordNanoporeData Public

    For posting public data

    2

  6. minimap minimap Public

    Forked from lh3/minimap

    Experimental tool to find approximate mapping positions between long sequences

    C 1

Repositories

Showing 10 of 41 repositories
  • cnpy Public Forked from rogersce/cnpy

    library to read/write .npy and .npz files in C/C++

    JGI-Bioinformatics/cnpy's past year of commit activity
    C++ 1 MIT 368 0 0 Updated Sep 25, 2025
  • hmmer-benchmarking Public

    Hmmsearch Benchmarking Study

    JGI-Bioinformatics/hmmer-benchmarking's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 15, 2025
  • zstr Public Forked from mateidavid/zstr

    A C++ header-only ZLib wrapper

    JGI-Bioinformatics/zstr's past year of commit activity
    C++ 0 MIT 83 0 0 Updated Dec 3, 2024
  • jgi-scalable-toolkit-workshop-24 Public

    2024 JGI's Scalable Metagenomics Toolbox Workshop

    JGI-Bioinformatics/jgi-scalable-toolkit-workshop-24's past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Oct 16, 2024
  • axolotl Public

    Axolotl is a Python library for scalable genome analysis, addressing the gap in tools for handling the rapid growth of genomic data with easy parallel processing.

    JGI-Bioinformatics/axolotl's past year of commit activity
    Python 5 1 2 0 Updated Sep 30, 2024
  • cromwell Public Forked from broadinstitute/cromwell

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    JGI-Bioinformatics/cromwell's past year of commit activity
    Scala 0 BSD-3-Clause 390 0 0 Updated May 11, 2023
  • jgi-globus-timer Public
    JGI-Bioinformatics/jgi-globus-timer's past year of commit activity
    Python 1 0 2 0 Updated Sep 1, 2022
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    JGI-Bioinformatics/alphafold's past year of commit activity
    Python 0 Apache-2.0 2,992 0 0 Updated Oct 25, 2021
  • HybridLPA Public Forked from Lizhen0909/SpaRC-MPI

    MPI version of Sparc

    JGI-Bioinformatics/HybridLPA's past year of commit activity
    C++ 0 GPL-3.0 2 0 0 Updated Dec 17, 2020
  • behave-command-line Public

    Feature testing for command line tools

    JGI-Bioinformatics/behave-command-line's past year of commit activity
    Python 0 1 4 0 Updated Oct 26, 2019
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