Bioinformatician working at the intersection of cancer genomics and deep learning.
My research is on somatic variant calling for neoantigen discovery — using deep learning over matched tumor DNA, normal DNA, and tumor RNA evidence to find the somatic mutations that give rise to neoantigens.
- transcriptformer-dev — TranscriptFormer cross-species single-cell foundation model: embeddings, inference, CellxGene tooling
- UCE-dev — Universal Cell Embeddings dev workspace
- install_deepsomatic — Install DeepSomatic r1.9 locally, no Docker
- ascp_igsr — Download IGSR data with Aspera Connect
- dotfiles — Personal shell dotfiles
- unified-devops — Unified DevOps configuration across platforms
- JoJoTsui.github.io — GitHub Pages site
🗃️ Archived: the 2022 NewHorizon clinical genomics platform (~25 NH-* repos — WGS/cfDNA/WGBS analysis, WDL pipelines, hereditary CRC reporting), git learning repos, and older experiments. Fully browsable, no longer maintained.