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build(deps): Bump the python-minor-patch group across 1 directory with 5 updates - #1394

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build(deps): Bump the python-minor-patch group across 1 directory with 5 updates#1394
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@dependabot dependabot Bot commented on behalf of github Oct 5, 2026 •
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Bumps the python-minor-patch group with 5 updates in the / directory:

Package From To
biolink-model 4.4.2 4.4.3
python-dotenv 1.2.3 1.2.4
duckdb 1.5.5 1.5.6
ruff 0.16.8 0.17.1
boto3 1.43.100 1.43.114

Updates biolink-model from 4.4.2 to 4.4.3

Release notes

Sourced from biolink-model's releases.

v4.4.3

What's Changed

New Contributors

Full Changelog: biolink/biolink-model@v4.4.2...v4.4.3

Changelog

Sourced from biolink-model's changelog.

4.4.3

What's Changed

Full Changelog: biolink/biolink-model@v4.4.2...v4.4.3

4.4.1

4.4.0

What's Changed

Full Changelog: biolink/biolink-model@v4.3.9...v4.4.0

4.3.9

What's Changed

  • migrate to uv
  • dependebot updates

4.3.8

What's Changed

... (truncated)

Commits

Updates python-dotenv from 1.2.3 to 1.2.4

Release notes

Sourced from python-dotenv's releases.

v1.2.4

Fixed

  • dotenv get no longer exits with code 1 for empty string values (KEY=) by [@​ShamikOfficial] in #700
  • An unquoted empty value followed by an inline comment (e.g. KEY= # comment) is now parsed as an empty string instead of the comment text by [@​Noethix55555] in #663
  • dotenv run --no-override now expands variable references with the same precedence as load_dotenv(override=False), so a value like ${BASE}/suffix uses the existing BASE from the environment instead of the one from the .env file by [@​ROTl24] in #698
Changelog

Sourced from python-dotenv's changelog.

[1.2.4] - 2026-10-01

Fixed

  • dotenv get no longer exits with code 1 for empty string values (KEY=) by [@​ShamikOfficial] in #700
  • An unquoted empty value followed by an inline comment (e.g. KEY= # comment) is now parsed as an empty string instead of the comment text by [@​Noethix55555] in #663
  • dotenv run --no-override now expands variable references with the same precedence as load_dotenv(override=False), so a value like ${BASE}/suffix uses the existing BASE from the environment instead of the one from the .env file by [@​ROTl24] in #698
Commits
  • a565c2c Bump version: 1.2.3 → 1.2.4
  • 4a7abd0 docs: add 1.2.4 release notes (#663, #698, #700)
  • f215c02 fix: dotenv get exits 0 for empty string values (#700)
  • 58f2d7c test: make test_run_with_command_flags portable and meaningful (#709)
  • e0310e5 fix: honor --no-override when expanding variables in dotenv run (#698)
  • a00cb2e docs: add CHANGELOG entry for #663 (fix #600)
  • f5485a6 fix: parse empty unquoted value with inline comment as empty string
  • See full diff in compare view

Updates duckdb from 1.5.5 to 1.5.6

Release notes

Sourced from duckdb's releases.

v1.5.6 Bugfix Release

See DuckDB's changelog for all changes in DuckDB.

Commits

Updates ruff from 0.16.8 to 0.17.1

Release notes

Sourced from ruff's releases.

0.17.1

Release Notes

Released on 2026-10-15.

Preview features

  • [pycodestyle] Don't treat None, True, or False as keywords (E271-E274) (#29322)

Bug fixes

  • Fix dedent with multiple leading comments (#29382)
  • [flake8-pyi] Detect legacy positional-only parameters in __new__ methods (PYI063) (#28502)
  • [flake8-pyi] Fix false positives on quoted annotations (PYI036) (#29274)
  • [perflint] Avoid invalid comprehension suggestions (PERF401, PERF403) (#29366)

Rule changes

  • Treat more collections and weakref containers as mutable (#29213)

Documentation

  • [flake8-import-conventions] Update default and example aliases (#29333)

Contributors

Install ruff 0.17.1

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.17.1/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ruff/releases/download/0.17.1/ruff-installer.ps1 | iex"

Download ruff 0.17.1

| File | Platform | Checksum |

... (truncated)

Changelog

Sourced from ruff's changelog.

0.17.1

Released on 2026-10-15.

Preview features

  • [pycodestyle] Don't treat None, True, or False as keywords (E271-E274) (#29322)

Bug fixes

  • Fix dedent with multiple leading comments (#29382)
  • [flake8-pyi] Detect legacy positional-only parameters in __new__ methods (PYI063) (#28502)
  • [flake8-pyi] Fix false positives on quoted annotations (PYI036) (#29274)
  • [perflint] Avoid invalid comprehension suggestions (PERF401, PERF403) (#29366)

Rule changes

  • Treat more collections and weakref containers as mutable (#29213)

Documentation

  • [flake8-import-conventions] Update default and example aliases (#29333)

Contributors

0.17.0

Released on 2026-10-09.

The executables in our macOS and Windows release archives and ruff wheels are now code-signed. macOS executables are signed with an Apple Developer ID certificate and notarized by Apple. Windows executables have timestamped Authenticode signatures from Azure Artifact Signing. This enables verification of the release publisher and binary integrity, supports publisher-based allowlisting, and should reduce security warnings and antivirus false positives.

Breaking changes

  • Update the default and latest Python versions for 3.15 (#28792)

    Ruff now defaults to Python 3.11 instead of 3.10 when no Python version is configured through target-version or requires-python. When checking for syntax errors without a configured Python version, Ruff now defaults to Python 3.15

... (truncated)

Commits
  • 4683270 Bump version to 0.17.1 (#29420)
  • 3514027 [ty] Update typing conformance suite pin (#29417)
  • 8294556 Update referenced PR security-review workflow (#29237)
  • d1e1b1f [ty] Preserve recursive aliases when rebuilding intersections (#29057)
  • 9352615 [perflint] Avoid invalid comprehension suggestions (PERF401, PERF403) (...
  • 83a3afc Fix dedent with multiple leading comments (#29382)
  • b42a873 [ty] Clarify object attribute write-contract rationale (#29384)
  • d01678e [ty] Clarify object attribute write-contract rationale (#29384)
  • 355b42a [ty] Avoid writable override contracts from object (#29373)
  • e26e6d2 [ty] Collect intersection inference through constraint relations (#28677)
  • Additional commits viewable in compare view

Updates boto3 from 1.43.100 to 1.43.114

Commits
  • 432fa17 Merge branch 'release-1.43.114'
  • bf4aed7 Bumping version to 1.43.114
  • fa3e3f2 Add changelog entries from botocore
  • 69ed308 Merge branch 'release-1.43.113'
  • 3abaa49 Merge branch 'release-1.43.113' into develop
  • 741f8d9 Bumping version to 1.43.113
  • ad1c6b5 Add changelog entries from botocore
  • 9ca5e36 Merge branch 'release-1.43.112'
  • f5581ba Merge branch 'release-1.43.112' into develop
  • 6f065c3 Bumping version to 1.43.112
  • Additional commits viewable in compare view

@dependabot dependabot Bot added the dependencies Pull requests that update a dependency file label Oct 5, 2026
@dependabot dependabot Bot changed the title build(deps): bump the python-minor-patch group across 1 directory with 5 updates chore(deps): bump the python-minor-patch group across 1 directory with 5 updates Oct 12, 2026
@dependabot
dependabot Bot force-pushed the dependabot/pip/python-minor-patch-2bce93b4b9 branch from 288840d to 0844624 Compare October 12, 2026 16:23
@realmarcin realmarcin mentioned this pull request Oct 16, 2026
Closed
@dependabot
build(deps): Bump the python-minor-patch group across 1 directory wit…
956e76d 
…h 5 updates

Bumps the python-minor-patch group with 5 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [biolink-model](https://github.com/biolink/biolink-model) | `4.4.2` | `4.4.3` |
| [python-dotenv](https://github.com/theskumar/python-dotenv) | `1.2.3` | `1.2.4` |
| [duckdb](https://github.com/duckdb/duckdb-python) | `1.5.5` | `1.5.6` |
| [ruff](https://github.com/astral-sh/ruff) | `0.16.8` | `0.17.1` |
| [boto3](https://github.com/boto/boto3) | `1.43.100` | `1.43.114` |



Updates `biolink-model` from 4.4.2 to 4.4.3
- [Release notes](https://github.com/biolink/biolink-model/releases)
- [Changelog](https://github.com/biolink/biolink-model/blob/master/ChangeLog)
- [Commits](biolink/biolink-model@v4.4.2...v4.4.3)

Updates `python-dotenv` from 1.2.3 to 1.2.4
- [Release notes](https://github.com/theskumar/python-dotenv/releases)
- [Changelog](https://github.com/theskumar/python-dotenv/blob/main/CHANGELOG.md)
- [Commits](theskumar/python-dotenv@v1.2.3...v1.2.4)

Updates `duckdb` from 1.5.5 to 1.5.6
- [Release notes](https://github.com/duckdb/duckdb-python/releases)
- [Commits](duckdb/duckdb-python@v1.5.5...v1.5.6)

Updates `ruff` from 0.16.8 to 0.17.1
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.16.8...0.17.1)

Updates `boto3` from 1.43.100 to 1.43.114
- [Release notes](https://github.com/boto/boto3/releases)
- [Commits](boto/boto3@1.43.100...1.43.114)

---
updated-dependencies:
- dependency-name: biolink-model
  dependency-version: 4.4.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-minor-patch
- dependency-name: boto3
  dependency-version: 1.43.107
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-minor-patch
- dependency-name: duckdb
  dependency-version: 1.5.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-minor-patch
- dependency-name: python-dotenv
  dependency-version: 1.2.4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-minor-patch
- dependency-name: ruff
  dependency-version: 0.16.10
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-minor-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot changed the title chore(deps): bump the python-minor-patch group across 1 directory with 5 updates build(deps): Bump the python-minor-patch group across 1 directory with 5 updates Oct 19, 2026
@dependabot
dependabot Bot force-pushed the dependabot/pip/python-minor-patch-2bce93b4b9 branch from 0844624 to 956e76d Compare October 19, 2026 05:38
@dependabot @github

dependabot Bot commented on behalf of github Oct 26, 2026

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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Oct 26, 2026
@dependabot
dependabot Bot deleted the dependabot/pip/python-minor-patch-2bce93b4b9 branch October 26, 2026 05:59
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