[2/4] Split pull request CI by responsibility

.github/workflows/basic.yml

@@ -8,95 +8,130 @@ on:
       - reopened
       - synchronize
 
+concurrency:
+  group: basic-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+env:
+  HYDRA_LAUNCHER: fork
+  MPIR_CVAR_CH4_NETMOD: ofi
+  TERM: xterm-256color
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
 jobs:
-  test-libE:
+  static:
+    if: "! github.event.pull_request.draft"
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v7
+        with:
+          lfs: true
+      - uses: prefix-dev/setup-pixi@v0.10.2
+        with:
+          pixi-version: v0.69.0
+          cache: true
+          frozen: true
+          environments: py312
+      - name: Run static analysis
+        run: pixi run -e py312 flake8 libensemble && pixi run -e py312 mypy
+
+  unit:
     if: "! github.event.pull_request.draft"
-    runs-on: ${{ matrix.os }}
+    runs-on: ubuntu-latest
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest]
-        mpi-version: [mpich]
-        python-version: ["py312", "py313", "py314"]
-        comms-type: [m, l]
-        include:
-          - os: macos-latest
-            python-version: "py312"
-            mpi-version: mpich
-            comms-type: m
-          - os: macos-latest
-            python-version: "py312"
-            mpi-version: mpich
-            comms-type: l
-
-    env:
-      HYDRA_LAUNCHER: "fork"
-      MPIR_CVAR_CH4_NETMOD: "ofi"
-      TERM: xterm-256color
-      GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-
-    defaults:
-      run:
-        shell: bash -l {0}
-
+        environment: [py312, py313, py314]
     steps:
       - uses: actions/checkout@v7
         with:
           lfs: true
-
-      - name: Checkout lockfile
-        run: git lfs checkout
-
       - uses: prefix-dev/setup-pixi@v0.10.2
         with:
           pixi-version: v0.69.0
+          cache: true
           frozen: true
-          environments: ${{ matrix.python-version }}
-          activate-environment: ${{ matrix.python-version }}
-
-      - name: Install minq
-        run: |
-          pixi run -e ${{ matrix.python-version }} ./install/install_minq.sh
-
-      - name: Install libEnsemble, test flake8
-        run: |
-          pip install -e .
-          flake8 libensemble
-
-      - name: Install mypy
-        run: pip install mypy
-
-      - name: Run mypy (limited scope)
-        run: mypy
-
-      - name: Remove various tests on newer pythons
-        if: matrix.python-version == 'py312' || matrix.python-version == 'py313' || matrix.python-version == 'py314'
-        run: |
-          rm ./libensemble/tests/functionality_tests/test_local_sine_tutorial*.py # matplotlib errors on py312
+          environments: ${{ matrix.environment }}
+      - name: Run unit tests
+        run: pixi run -e ${{ matrix.environment }} ./libensemble/tests/run_tests.py -u --no-coverage --durations 20
 
-      - name: Run simple tests, Ubuntu
-        if: matrix.os == 'ubuntu-latest'
-        run: |
-          ./libensemble/tests/run_tests.py -A "-W error" -${{ matrix.comms-type }}
-
-      - name: Run simple tests, macOS
-        if: matrix.os == 'macos-latest'
-        run: |
-          pixi run -e ${{ matrix.python-version }} ./libensemble/tests/run_tests.py -A "-W error" -${{ matrix.comms-type }}
-
-      - name: Merge coverage
-        run: |
-          mv libensemble/tests/.cov* .
+  core:
+    if: "! github.event.pull_request.draft"
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        comms: [m, l]
+    steps:
+      - uses: actions/checkout@v7
+        with:
+          lfs: true
+      - uses: prefix-dev/setup-pixi@v0.10.2
+        with:
+          pixi-version: v0.69.0
+          cache: true
+          frozen: true
+          environments: py312
+      - name: Install MINQ
+        run: pixi run -e py312 ./install/install_minq.sh
+      - name: Run core tests
+        run: >-
+          pixi run -e py312 ./libensemble/tests/run_tests.py -r -${{ matrix.comms }}
+          -A "-W error" --no-coverage --fail-fast --durations 25
+          --timings-json timings-${{ matrix.comms }}.json
+      - name: Upload timings
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: core-${{ matrix.comms }}-timings
+          path: timings-${{ matrix.comms }}.json
+          if-no-files-found: ignore
 
+  macos-smoke:
+    if: "! github.event.pull_request.draft"
+    runs-on: macos-latest
+    steps:
+      - uses: actions/checkout@v7
+        with:
+          lfs: true
+      - uses: prefix-dev/setup-pixi@v0.10.2
+        with:
+          pixi-version: v0.69.0
+          cache: true
+          frozen: true
+          environments: py312
+      - name: Run local smoke tests
+        run: >-
+          pixi run -e py312 ./libensemble/tests/run_tests.py -r -l
+          --no-coverage --fail-fast --durations 20
+          --match test_1d_super_simple.py
+          --match test_persistent_uniform_sampling_async.py
+          --match test_executor_simple.py
+      - name: Run MPI smoke tests
+        run: >-
+          pixi run -e py312 ./libensemble/tests/run_tests.py -r -m
+          --no-coverage --fail-fast --durations 20
+          --match test_1d_super_simple.py
+          --match test_persistent_uniform_sampling_async.py
+
+  coverage:
+    if: "! github.event.pull_request.draft"
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v7
+        with:
+          lfs: true
+      - uses: prefix-dev/setup-pixi@v0.10.2
+        with:
+          pixi-version: v0.69.0
+          cache: true
+          frozen: true
+          environments: py312
+      - name: Install MINQ
+        run: pixi run -e py312 ./install/install_minq.sh
+      - name: Run canonical coverage suite
+        run: pixi run -e py312 ./libensemble/tests/run_tests.py -l --coverage --fail-fast --durations 25
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v7
         env:
           CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
-
-  spellcheck:
-    name: Spellcheck release branch
-    if: contains(github.base_ref, 'develop')
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v7
-      - uses: crate-ci/typos@v1.50.1

docs/conf.py

@@ -126,6 +126,8 @@ class AxParameterWarning(Warning):  # Ensure it's a real warning subclass
     r"https://libensemble\.slack\.com(?:/.*)?$",
     r"https://software\.intel\.com/.*",
     r"https://stackoverflow\.com/.*",
+    r"https?://www\.mpich\.org/.*",
+    r"https://www\.sfu\.ca/~ssurjano/camel6\.html",
 ]
 
 autodoc_pydantic_model_show_json = False