Issues

• Investigate native scANVI CMS1 F1 discrepancy in full-data reproduction

  MMatinGerami/crc-singlecell-reference-mapping#7 · Filter by author aynemoon opened on Nov 8, 2026
  1

• Add a fifth reference-mapping method to the benchmark

  enhancement
  MMatinGerami/crc-singlecell-reference-mapping#4 · Filter by author MMatinGerami opened on Nov 6, 2026

• Per-patient calibration of the confidence

  MMatinGerami/crc-singlecell-reference-mapping#3 · Filter by author MMatinGerami opened on Sep 29, 2026

• Compare with CellTypist's published colorectal model

  MMatinGerami/crc-singlecell-reference-mapping#2 · Filter by author MMatinGerami opened on Sep 29, 2026

• Add a novelty flag to scmap annotate

  MMatinGerami/crc-singlecell-reference-mapping#1 · Filter by author MMatinGerami opened on Sep 29, 2026