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Complete DuckVEP phase, haplotype and structural-event conformance for rare-disease reanalysis
enhancementNew feature or requestNew feature or requestStatus: Open.#174 In RGenomicsETL/duckhts;Consolidate read_bcf reader policy before adding read_geno
architectureInternal boundaries, authorities, lifecycle, and public-surface structureInternal boundaries, authorities, lifecycle, and public-surface structureenhancementNew feature or requestNew feature or requestperformanceMeasured runtime, memory, I/O, or scaling workMeasured runtime, memory, I/O, or scaling workStatus: Open.#173 In RGenomicsETL/duckhts;Bound worker-local reference caches and remove global fetch serialization
architectureInternal boundaries, authorities, lifecycle, and public-surface structureInternal boundaries, authorities, lifecycle, and public-surface structureenhancementNew feature or requestNew feature or requestperformanceMeasured runtime, memory, I/O, or scaling workMeasured runtime, memory, I/O, or scaling workStatus: Open.Add read_geno() as a record-major typed GT/PS reader
enhancementNew feature or requestNew feature or requestStatus: Open.#160 In RGenomicsETL/duckhts;Benchmark complete DuckVEP, FastVEP, and VEP tab/CSQ field contracts
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#159 In RGenomicsETL/duckhts;DuckVEP: expose complete typed transcript projection and presentation facts
enhancementNew feature or requestNew feature or requestStatus: Open.#158 In RGenomicsETL/duckhts;DuckVEP: support circular sequence regions and origin-crossing annotation
architectureInternal boundaries, authorities, lifecycle, and public-surface structureInternal boundaries, authorities, lifecycle, and public-surface structureenhancementNew feature or requestNew feature or requestStatus: Open.Add native coordinate sort, duplicate marking, indexing, and one-pass alignment QC
enhancementNew feature or requestNew feature or requestStatus: Open.#147 In RGenomicsETL/duckhts;chore(duckvep): publish provenance-labelled MANE-on-GRCh37 mappings for callers
documentationImprovements or additions to documentationImprovements or additions to documentationenhancementNew feature or requestNew feature or requestStatus: Open.#141 In RGenomicsETL/duckhts;DuckVEP: validate species-general Ensembl models and genetic codes
enhancementNew feature or requestNew feature or requestStatus: Open.#119 In RGenomicsETL/duckhts;DuckVEP: complete STR, imprecise-SV, and structural preparation
enhancementNew feature or requestNew feature or requestStatus: Open.#98 In RGenomicsETL/duckhts;DuckVEP: reach the full-model one-million/s throughput floor and bound memory
enhancementNew feature or requestNew feature or requestperformanceMeasured runtime, memory, I/O, or scaling workMeasured runtime, memory, I/O, or scaling workStatus: Open.