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Update geopandas and cluster environment variables for RHEL9 on kestrel - #259
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patrickbrown4 wants to merge 5 commits into
Open
patrickbrown4 wants to merge 5 commits into
patrickbrown4 wants to merge 5 commits into
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cavraam
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Oct 21, 2026
cavraam
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The PR looks great, thank you for the prompt response here @patrickbrown4!
Approved, provided that pending runs complete; very minor comments/questions attached.
I wonder if the runs will reveal additional minor edits related to reporting (I don't think we have hpc-related scripts for reporting though...)
| import copy_rev_folders | ||
| from pathlib import Path | ||
| from collections import OrderedDict | ||
| sys.path.append(str(Path(__file__).parent.parent)) |
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curious why we might need this...
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Great to have this defined in only one spot and call if needed
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Summary
Kestrel has updated from Red Hat Enterprise Linux 8 (RHEL8) to RHEL9; details are available at https://natlabrockies.github.io/HPC/RHEL9_upgrade/. This PR makes a few necessary changes for the new OS.
Necessary steps for internal lab users on kestrel
kl3.hpc.nlr.govnode instead ofkestrel.hpc.nlr.gov,kl1.hpc.nlr.gov, orkl2.hpc.nlr.gov(docs)reedsconda environment:conda env remove --name reeds(say yes to all prompts)environment.ymlfile from this branch:conda env create -f environment.ymlTechnical details
Implementation notes
NREL_CLUSTERenvironment variable has been changed toNLR_CLUSTER. We used it in many places, so I moved all that functionality toreeds.slurm.get_cluster()to make it easier to update in the future.REEDS_USE_SLURMenvironment variable as it doesn't seem necessaryRelevant sources or documentation
https://natlabrockies.github.io/HPC/RHEL9_upgrade/
Validation, testing, and comparison report(s)
I'll add a full-US comparison once it finishes.
Checklist for author
Details to double-check
General information to guide review
Did you use LLM tools (chatbot or copilot) in the preparation of this PR? If so, describe how
No