Repository of gene sets used by the Pipkin Lab for Gene Set Enrichment Analysis
Important Note: If you are not intimately familiar with working with gene symbols in Excel, DO NOT save edited CSV files! Excel automatically converts strings of text that resemble dates into date formats. This changes the gene symbol and may be difficult or in some cases near impossible to revert.
The ATAC_peaks/ folder contains the ATAC-seq peak sets used in the Tcf7 ATAC-seq manuscript. They use the same format as the gene sets, with peaks identified as chr:start-end (GRCm38). See ATAC_peaks/README.md and ATAC_peaks/Tcf7ATAC_PeakSets_Metadata.csv for how each set was defined.