Issues

• ZeroDivisionError in st_pipeline

  SpatialTranscriptomicsResearch/st_pipeline#136 · Filter by author jocelynnijin opened on Jul 14, 2025

• Mapping with STARsolo?

  SpatialTranscriptomicsResearch/st_pipeline#135 · Filter by author ss6025 opened on May 21, 2025

• how to get unmapped read by using st_pipeline?

  SpatialTranscriptomicsResearch/st_pipeline#134 · Filter by author dongwei1220 opened on Apr 11, 2025

• Error running the pipeline expected str, bytes or os.PathLike object, not NoneType

  SpatialTranscriptomicsResearch/st_pipeline#133 · Filter by author nishah-27 opened on Mar 1, 2024
  2

• The function convertEnsemblToNames.py get error!

  SpatialTranscriptomicsResearch/st_pipeline#129 · Filter by author EddieLv opened on May 5, 2022

• Issue with demultiplexing using TAGGD.

  SpatialTranscriptomicsResearch/st_pipeline#127 · Filter by author SalendraSingh opened on Jan 19, 2022
  1

• Segmentation fault during dataset creation step

  SpatialTranscriptomicsResearch/st_pipeline#126 · Filter by author JackCollora opened on Dec 14, 2021
  3

• Running st pipeline unrecognized arguments

  SpatialTranscriptomicsResearch/st_pipeline#125 · Filter by author ajyaca opened on Aug 24, 2021
  6

• Could not retrieve index file error

  SpatialTranscriptomicsResearch/st_pipeline#124 · Filter by author johannesnicolaus opened on Jul 11, 2021
  2

• build install failed

  SpatialTranscriptomicsResearch/st_pipeline#121 · Filter by author ganguvamshi opened on Jan 8, 2021
  1