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UCSF Data Science CoLab

A collaboration-based research lab that focuses on data analysis and computational methods development

27 followers
San Francisco, CA, USA
https://dscolab.ucsf.edu/
dscolab@ucsf.edu

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pan_cancer_immune_archetypes pan_cancer_immune_archetypes Public

Python 13 3
cyclone cyclone Public

R 3 4
BMS-225A BMS-225A Public

Materials for BMS 225A workshop on reproducible research and data exploration

R 2 2
aarao_scripts aarao_scripts Public

Essential Scripts used by Arjun Rao

Python 2
combes_et_al_COVID_2020 combes_et_al_COVID_2020 Public

A repository containing code and files required to reproduce data published in Combes et.al. (2020)

R 2 2
data_processing_pipelines data_processing_pipelines Public

A repository to store the existing pipelines to process the various CoLabs datasets

Nextflow 2 1

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Showing 10 of 20 repositories

essential_scripts Public
Essential Scripts utilized by members and collaborators of DSCoLab

UCSF-DSCOLAB/essential_scripts's past year of commit activity

R 0 0 0 10 Updated Jul 17, 2026
jespersen_et_al_HBV_2026 Public
Software and auxiliary data files associated with the Jespersen & Avanesyan et.al. (2026)

UCSF-DSCOLAB/jespersen_et_al_HBV_2026's past year of commit activity

R 0 MIT 0 0 0 Updated Jul 14, 2026
vulcan_compass Public

UCSF-DSCOLAB/vulcan_compass's past year of commit activity

Python 0 0 0 0 Updated Jun 11, 2026
vulcan_containers Public

UCSF-DSCOLAB/vulcan_containers's past year of commit activity

Singularity 0 0 0 1 Updated May 22, 2026
vulcan_scviz Public

UCSF-DSCOLAB/vulcan_scviz's past year of commit activity

R 0 0 0 0 Updated May 20, 2026
ImmunoMicrobiome Public
This repository contains the code and data related to the ImmunoMicrobiome project.

UCSF-DSCOLAB/ImmunoMicrobiome's past year of commit activity

R 0 MIT 0 0 0 Updated Apr 28, 2026
spatial_transcriptomics_colitis_analysis_2024 Public
This repository contains the code necessary to reproduce the analyses and figures presented in our spatial transcriptomics colitis paper.

UCSF-DSCOLAB/spatial_transcriptomics_colitis_analysis_2024's past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Apr 19, 2026
sicca_pipeline Public
pipeline for running SICCA scRNA-seq analysis

UCSF-DSCOLAB/sicca_pipeline's past year of commit activity

R 0 0 0 0 Updated Mar 21, 2026
data_processing_pipelines Public
A repository to store the existing pipelines to process the various CoLabs datasets

UCSF-DSCOLAB/data_processing_pipelines's past year of commit activity

Nextflow 2 1 38 10 Updated Oct 16, 2025
hackathon_primer Public

UCSF-DSCOLAB/hackathon_primer's past year of commit activity

HTML 0 2 0 0 Updated Aug 7, 2025

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