Issues

• Dump the files collection to a flattened relational DuckDB database

  enhancement
  abdenlab/cfdb#123 · Filter by author conradbzura opened on Oct 27, 2026
  

• Rename the project from cfdb to dldb (Data Library Database)

  enhancement
  abdenlab/cfdb#122 · Filter by author conradbzura opened on Oct 9, 2026

• Pin the Dockerfile.mongodb base image by digest

  enhancement
  abdenlab/cfdb#115 · Filter by author conradbzura opened on Aug 27, 2026

• Remove or implement the documented production-TLS local path

  documentation
  abdenlab/cfdb#114 · Filter by author conradbzura opened on Aug 27, 2026

• Fix make mongodb failing to start from a clean checkout

  bug
  abdenlab/cfdb#113 · Filter by author conradbzura opened on Aug 27, 2026
  

• Match nested .DS_Store files in .dockerignore

  bug
  abdenlab/cfdb#112 · Filter by author conradbzura opened on Aug 27, 2026

• Serve ENCODE .hic contact maps by converting them to mcool

  enhancement
  abdenlab/cfdb#111 · Filter by author conradbzura opened on Aug 27, 2026

• Fold a processor identity into the workflow cache key

  bug
  abdenlab/cfdb#109 · Filter by author conradbzura opened on Aug 18, 2026
  

• Report a failed sync as failed rather than completed

  bug
  abdenlab/cfdb#106 · Filter by author conradbzura opened on Aug 12, 2026

• Populate accession_id for HuBMAP collections

  enhancement
  abdenlab/cfdb#102 · Filter by author conradbzura opened on Aug 11, 2026

• Support ENCODE starch peak files end-to-end via BEDOPS unstarch

  enhancement
  abdenlab/cfdb#72 · Filter by author conradbzura opened on Jun 24, 2026

• Make oversized BED files processable instead of failing mid-pipeline

  bug
  abdenlab/cfdb#70 · Filter by author conradbzura opened on Jun 23, 2026

• Follow-up hardening for the bounded-concurrency pipeline (post-#45 review)

  enhancement
  abdenlab/cfdb#64 · Filter by author conradbzura opened on Jun 23, 2026

• Reduce the worker-side discovery to an inert stub instead of rebuilding it

  enhancement
  abdenlab/cfdb#61 · Filter by author conradbzura opened on Jun 22, 2026
  1

• Restructure tests/integration/ to canonical Scenario/Builder/Pairwise/Hypothesis scaffolding

  enhancement
  abdenlab/cfdb#35 · Filter by author conradbzura opened on May 3, 2026

• ENCODE index file support for genomic visualization

  abdenlab/cfdb#1 · Filter by author conradbzura opened on Feb 13, 2026