Issues

• Single cell visualization tools

  abearab/scez#28 · Filter by author abearab opened on Mar 30, 2026

• Literature review on single cell trajectory analysis

  abearab/scez#24 · Filter by author abearab opened on Feb 11, 2025

• Enhancer target gene mapping using multimodal data with ATAC + RNA

  abearab/scez#21 · Filter by author abearab opened on Nov 21, 2024
  2

• Reconstruction of celltype-specific networks

  abearab/scez#20 · Filter by author abearab opened on Nov 21, 2024
  2

• GPU acceleration

  abearab/scez#19 · Filter by author abearab opened on Jul 23, 2024

• CITE-seq data analysis workflows

  abearab/scez#18 · Filter by author abearab opened on Jun 28, 2024

• Perturb-seq data analysis workflows

  abearab/scez#17 · Filter by author abearab opened on Jun 28, 2024
  5

• Reference mapping

  abearab/scez#16 · Filter by author abearab opened on Jun 14, 2024
  

• Implement functions to run set enrichment analysis

  abearab/scez#15 · Filter by author abearab opened on May 20, 2024

• imputation methods for single-cell RNA-seq data

  abearab/scez#14 · Filter by author abearab opened on May 12, 2024
  2

• Split representation and clustering tasks

  bugenhancement
  abearab/scez#9 · Filter by author abearab opened on Feb 7, 2024
  

• Map local dataset to census models

  abearab/scez#3 · Filter by author abearab opened on Dec 21, 2023
  1

• Scanpy → pyDESeq2 → SEA pipeline

  abearab/scez#2 · Filter by author abearab opened on Dec 21, 2023
  

• Define common tasks for single cell RNA-seq and multi-omics

  good first issue
  abearab/scez#1 · Filter by author abearab opened on Dec 21, 2023
  1