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Add group offsets to batched gap-block counts - #9

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mikessh wants to merge 3 commits into

feature/position-aware-gapblockfrom

feature/total-distance-counts

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Add group offsets to batched gap-block counts#9
mikessh wants to merge 3 commits into
feature/position-aware-gapblockfrom
feature/total-distance-counts

Commits on Oct 10, 2026
- Add optional group penalties to gapblock batches
  
  mikessh
  and
  codex
  committed
  757ea64
- Reduce linear distance mass alongside batched counts
  mikessh
  committed
  6aab661
- Reduce linked pair distance counts and linear mass in native batch
  mikessh
  committed
  1b08c45