Detection of LED head stage based on MTT files, used by the BBO lab at MPI for Neurobiology of Behavior

Installation

Windows

1. Install Anaconda
2. Open Anaconda prompt via Start Menu
3. Create conda environment using conda env create -f conda env create -f https://raw.githubusercontent.com/bbo-lab/multitrackpy/master/environment.yml

Usage

1. Switch to multitrackpy environment: conda activate multitrackpy
2. Run the program with python -m multitrackpy -h:

usage: __main__.py [-h] --mtt_file MTT_FILE --video_dir VIDEO_DIR
                   [--linedist_thres LINEDIST_THRES] [--corr_thres CORR_THRES]
                   [--led_thres LED_THRES] [--n_cpu N_CPU]
                   START_IDX END_IDX
__main__.py: error: the following arguments are required: START_IDX, END_IDX, --mtt_file, --video_dir